RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 FAM196BA6NMK8 535 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 BTBD19C9JJ37 291 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 CTNND1O60716 968 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 FKTNO75072 461 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 PDE6AP16499 860 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 PTPRAP18433 802 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 CTU1Q7Z7A3 348 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 METTL16Q86W50 562 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 HAUS7Q99871 368 aa12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 RIOK1Q9BRS2 568 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 DHX36Q9H2U1 1008 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-206ENST00000553437 CXCL11O14625 94 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 SLC9C2Q5TAH2 1124 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 CERS3Q8IU89 383 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 ZCCHC17Q9NP64 241 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 PAG1Q9NWQ8 432 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 PI4KBQ9UBF8 816 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 HERC5Q9UII4 1024 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 PALD1Q9ULE6 856 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 AFG3L2Q9Y4W6 797 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 ZHX2Q9Y6X8 837 aa12.48□□□□□ -0.41
CCDC88C-206ENST00000553437 ZNF532Q9HCE3 1301 aa12.47□□□□□ -0.41
CCDC88C-206ENST00000553437 SLFNL1Q499Z3 407 aa12.47□□□□□ -0.41
CCDC88C-206ENST00000553437 DNAJC18Q9H819 358 aa12.47□□□□□ -0.41
CCDC88C-206ENST00000553437 PICK1Q9NRD5 415 aa12.47□□□□□ -0.41
CCDC88C-206ENST00000553437 ECHDC1Q9NTX5 307 aa12.47□□□□□ -0.41
CCDC88C-206ENST00000553437 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-206ENST00000553437 MAGEB6P1A0A0J9YX57 407 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 CCDC85CA6NKD9 419 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 CHGBP05060 677 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 ADD2P35612 726 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 CAP2P40123 477 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 CAP1Q01518 475 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 TAF1CQ15572 869 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 GPAT2Q6NUI2 795 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 ANKRD23Q86SG2 305 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 CCDC84Q86UT8 332 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 FOXP4Q8IVH2 680 aaPredicted RBP12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 ZFYVE28Q9HCC9 887 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 SAP30BPQ9UHR5 308 aaKnown RBP12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 CASP8AP2Q9UKL3 1982 aa12.46□□□□□ -0.41
CCDC88C-206ENST00000553437 MAST2Q6P0Q8 1798 aa12.46□□□□□ -0.42
CCDC88C-206ENST00000553437 A0A0G2JLL6 359 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 USP5P45974 858 aa12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 JAG1P78504 1218 aa12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 HDAC1Q13547 482 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 TSHZ3Q63HK5 1081 aa12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 PRRT2Q7Z6L0 340 aaPredicted RBP12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 LAMB1P07942 1786 aa12.45□□□□□ -0.42
CCDC88C-206ENST00000553437 HTTP42858 3142 aa12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 PDHXO00330 501 aa12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 TLR2O60603 784 aa12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 SP3Q02447 781 aa12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 UBE3CQ15386 1083 aa12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 PKN2Q16513 984 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 LCORLQ8N3X6 602 aa12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 OTUD7AQ8TE49 926 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-206ENST00000553437 ADGRA2Q96PE1 1338 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 TRIM75PA6NK02 468 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 HLA-DOAP06340 250 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 PLCD1P51178 756 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 AAMPQ13685 434 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 SHROOM1Q2M3G4 852 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 SLC4A8Q2Y0W8 1093 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 C17orf99Q6UX52 265 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 FASTKD5Q7L8L6 764 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 CRACR2BQ8N4Y2 399 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 CD99L2Q8TCZ2 262 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 ERO1AQ96HE7 468 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 EHD4Q9H223 541 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 ARMT1Q9H993 441 aa12.43□□□□□ -0.42
CCDC88C-206ENST00000553437 SALL3Q9BXA9 1300 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 USP17L5A8MUK1 530 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 PRKAB2O43741 272 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 MBD4O95243 580 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 EVX2Q03828 476 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 SPP2Q13103 211 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 TATDN1Q6P1N9 297 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 FBXO46Q6PJ61 603 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 OTOP1Q7RTM1 612 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 TTC6Q86TZ1 520 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 KBTBD3Q8NAB2 608 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 ZNF280CQ8ND82 737 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 EXOC6Q8TAG9 804 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 PI4K2BQ8TCG2 481 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 SDR42E1Q8WUS8 393 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 GPATCH3Q96I76 525 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 WDR18Q9BV38 432 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 CRNKL1Q9BZJ0 848 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 DCP1AQ9NPI6 582 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 SERPINB13Q9UIV8 391 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 HPS5Q9UPZ3 1129 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 TRIM17Q9Y577 477 aa12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 MYO5AQ9Y4I1 1855 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-206ENST00000553437 DOCK2Q92608 1830 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 TTC41PQ6P2S7 1318 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 GDF11O95390 407 aa12.41□□□□□ -0.42
CCDC88C-206ENST00000553437 ASNSP08243 561 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms