RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 NOL10Q9BSC4 688 aaKnown RBP23.41■■□□□ 1.34
PTCH1-227ENST00000553256 PI4KBQ9UBF8 816 aa23.41■■□□□ 1.34
PTCH1-227ENST00000553256 HTTP42858 3142 aa23.41■■□□□ 1.34
PTCH1-227ENST00000553256 JAG1P78504 1218 aa23.4■■□□□ 1.34
PTCH1-227ENST00000553256 CRHR2Q13324 411 aa23.4■■□□□ 1.34
PTCH1-227ENST00000553256 TSHZ3Q63HK5 1081 aa23.4■■□□□ 1.34
PTCH1-227ENST00000553256 PI4K2BQ8TCG2 481 aa23.4■■□□□ 1.34
PTCH1-227ENST00000553256 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.4■■□□□ 1.34
PTCH1-227ENST00000553256 HERC5Q9UII4 1024 aaKnown RBP23.4■■□□□ 1.34
PTCH1-227ENST00000553256 PALD1Q9ULE6 856 aa23.4■■□□□ 1.34
PTCH1-227ENST00000553256 AFG3L2Q9Y4W6 797 aa23.4■■□□□ 1.34
PTCH1-227ENST00000553256 DOCK1Q14185 1865 aa23.39■■□□□ 1.34
PTCH1-227ENST00000553256 BTBD19C9JJ37 291 aa23.39■■□□□ 1.33
PTCH1-227ENST00000553256 CETPP11597 493 aa23.39■■□□□ 1.33
PTCH1-227ENST00000553256 CAP1Q01518 475 aa23.39■■□□□ 1.33
PTCH1-227ENST00000553256 SNAPC2Q13487 334 aa23.39■■□□□ 1.33
PTCH1-227ENST00000553256 BCL11AQ9H165 835 aa23.39■■□□□ 1.33
PTCH1-227ENST00000553256 ZCCHC17Q9NP64 241 aaKnown RBP23.39■■□□□ 1.33
PTCH1-227ENST00000553256 SUPT16HQ9Y5B9 1047 aaKnown RBP23.39■■□□□ 1.33
PTCH1-227ENST00000553256 CXCL11O14625 94 aa23.38■■□□□ 1.33
PTCH1-227ENST00000553256 UBE3CQ15386 1083 aa23.38■■□□□ 1.33
PTCH1-227ENST00000553256 FOXP4Q8IVH2 680 aaPredicted RBP23.38■■□□□ 1.33
PTCH1-227ENST00000553256 LCORLQ8N3X6 602 aa23.38■■□□□ 1.33
PTCH1-227ENST00000553256 MCOLN1Q9GZU1 580 aa23.38■■□□□ 1.33
PTCH1-227ENST00000553256 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.38■■□□□ 1.33
PTCH1-227ENST00000553256 TTC41PQ6P2S7 1318 aa23.37■■□□□ 1.33
PTCH1-227ENST00000553256 MAGEB6P1A0A0J9YX57 407 aa23.37■■□□□ 1.33
PTCH1-227ENST00000553256 CAP2P40123 477 aa23.37■■□□□ 1.33
PTCH1-227ENST00000553256 GPAT2Q6NUI2 795 aa23.37■■□□□ 1.33
PTCH1-227ENST00000553256 SMC5Q8IY18 1101 aa23.37■■□□□ 1.33
PTCH1-227ENST00000553256 GCC1Q96CN9 775 aa23.37■■□□□ 1.33
PTCH1-227ENST00000553256 A0A0G2JLL6 359 aaPredicted RBP23.36■■□□□ 1.33
PTCH1-227ENST00000553256 IGHDP01880 384 aa23.36■■□□□ 1.33
PTCH1-227ENST00000553256 PRRT2Q7Z6L0 340 aaPredicted RBP23.36■■□□□ 1.33
PTCH1-227ENST00000553256 EHD4Q9H223 541 aa23.36■■□□□ 1.33
PTCH1-227ENST00000553256 ZHX2Q9Y6X8 837 aa23.36■■□□□ 1.33
PTCH1-227ENST00000553256 ADGRA2Q96PE1 1338 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 EVX2Q03828 476 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 GABPAQ06546 454 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 SHROOM1Q2M3G4 852 aaPredicted RBP23.35■■□□□ 1.33
PTCH1-227ENST00000553256 OTUD7BQ6GQQ9 843 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 ANKRD23Q86SG2 305 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 CCDC84Q86UT8 332 aaPredicted RBP23.35■■□□□ 1.33
PTCH1-227ENST00000553256 KBTBD3Q8NAB2 608 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 ABHD8Q96I13 439 aa23.35■■□□□ 1.33
PTCH1-227ENST00000553256 SAP30BPQ9UHR5 308 aaKnown RBP23.35■■□□□ 1.33
PTCH1-227ENST00000553256 PTPRFP10586 1907 aa23.34■■□□□ 1.33
PTCH1-227ENST00000553256 TATDN1Q6P1N9 297 aa23.34■■□□□ 1.33
PTCH1-227ENST00000553256 DCP1AQ9NPI6 582 aaPredicted RBP23.34■■□□□ 1.33
PTCH1-227ENST00000553256 STAP2Q9UGK3 403 aa23.34■■□□□ 1.33
PTCH1-227ENST00000553256 FKTNO75072 461 aa23.33■■□□□ 1.33
PTCH1-227ENST00000553256 PLCD1P51178 756 aa23.33■■□□□ 1.33
PTCH1-227ENST00000553256 CTU1Q7Z7A3 348 aaKnown RBP23.33■■□□□ 1.33
PTCH1-227ENST00000553256 PUS7LQ9H0K6 701 aaKnown RBP23.33■■□□□ 1.33
PTCH1-227ENST00000553256 ARMT1Q9H993 441 aa23.33■■□□□ 1.33
PTCH1-227ENST00000553256 PICK1Q9NRD5 415 aa23.33■■□□□ 1.33
PTCH1-227ENST00000553256 MYH1P12882 1939 aa23.33■■□□□ 1.32
PTCH1-227ENST00000553256 MYH7P12883 1935 aa23.32■■□□□ 1.32
PTCH1-227ENST00000553256 PRKAB2O43741 272 aa23.32■■□□□ 1.32
PTCH1-227ENST00000553256 USP5P45974 858 aa23.32■■□□□ 1.32
PTCH1-227ENST00000553256 DGKZQ13574 1117 aa23.32■■□□□ 1.32
PTCH1-227ENST00000553256 SDR42E1Q8WUS8 393 aa23.32■■□□□ 1.32
PTCH1-227ENST00000553256 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.32■■□□□ 1.32
PTCH1-227ENST00000553256 MBD4O95243 580 aa23.31■■□□□ 1.32
PTCH1-227ENST00000553256 MX1P20591 662 aa23.31■■□□□ 1.32
PTCH1-227ENST00000553256 TAF1CQ15572 869 aaPredicted RBP23.31■■□□□ 1.32
PTCH1-227ENST00000553256 ANKRD45Q5TZF3 282 aa23.31■■□□□ 1.32
PTCH1-227ENST00000553256 CRNKL1Q9BZJ0 848 aaKnown RBP23.31■■□□□ 1.32
PTCH1-227ENST00000553256 TLR2O60603 784 aa23.3■■□□□ 1.32
PTCH1-227ENST00000553256 GLRX3O76003 335 aaKnown RBP23.3■■□□□ 1.32
PTCH1-227ENST00000553256 OSBP2Q969R2 916 aa23.3■■□□□ 1.32
PTCH1-227ENST00000553256 GPATCH3Q96I76 525 aa23.3■■□□□ 1.32
PTCH1-227ENST00000553256 WDR18Q9BV38 432 aa23.3■■□□□ 1.32
PTCH1-227ENST00000553256 ATAD5Q96QE3 1844 aa23.3■■□□□ 1.32
PTCH1-227ENST00000553256 HLA-DOAP06340 250 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 SHMT1P34896 483 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 SLC4A8Q2Y0W8 1093 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 SH3D19Q5HYK7 790 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 C17orf99Q6UX52 265 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 NAV1Q8NEY1 1877 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 ZFYVE28Q9HCC9 887 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 GINM1Q9NU53 330 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 SERPINB13Q9UIV8 391 aa23.29■■□□□ 1.32
PTCH1-227ENST00000553256 SMIM22K7EJ46 135 aa23.28■■□□□ 1.32
PTCH1-227ENST00000553256 PDHXO00330 501 aa23.28■■□□□ 1.32
PTCH1-227ENST00000553256 TTC6Q86TZ1 520 aa23.28■■□□□ 1.32
PTCH1-227ENST00000553256 ZNF280CQ8ND82 737 aa23.28■■□□□ 1.32
PTCH1-227ENST00000553256 STRBPQ96SI9 672 aaKnown RBP23.28■■□□□ 1.32
PTCH1-227ENST00000553256 TBC1D2Q9BYX2 928 aa23.28■■□□□ 1.32
PTCH1-227ENST00000553256 SLC45A1Q9Y2W3 748 aa23.28■■□□□ 1.32
PTCH1-227ENST00000553256 TRIM75PA6NK02 468 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 USP17L5A8MUK1 530 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 RNF113AO15541 343 aaKnown RBP23.27■■□□□ 1.32
PTCH1-227ENST00000553256 CYP2D6P10635 497 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 PDE1AP54750 535 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 SP3Q02447 781 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 SPP2Q13103 211 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 ZSCAN25Q6NSZ9 544 aa23.27■■□□□ 1.32
PTCH1-227ENST00000553256 RWDD1Q9H446 243 aaPredicted RBP23.27■■□□□ 1.32
PTCH1-227ENST00000553256 ATP8A2Q9NTI2 1148 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms