RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 PI16Q6UXB8 463 aa15.83■□□□□ 0.12
PTCH1-221ENST00000550914 GPR108Q9NPR9 543 aa15.83■□□□□ 0.12
PTCH1-221ENST00000550914 HERC5Q9UII4 1024 aaKnown RBP15.83■□□□□ 0.12
PTCH1-221ENST00000550914 COLQQ9Y215 455 aaPredicted RBP15.83■□□□□ 0.12
PTCH1-221ENST00000550914 PNMA6EA0A0J9YXQ4 647 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 ADCY3O60266 1144 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 SLURP2P0DP57 97 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 MCAMP43121 646 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 FAM110CQ1W6H9 321 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 TBC1D9Q6ZT07 1266 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 HTATIP2Q9BUP3 242 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 RAI14Q9P0K7 980 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 GABRQQ9UN88 632 aa15.82■□□□□ 0.12
PTCH1-221ENST00000550914 TNPO2O14787 897 aaKnown RBP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 PLCG2P16885 1265 aa15.81■□□□□ 0.12
PTCH1-221ENST00000550914 CAP2P40123 477 aa15.81■□□□□ 0.12
PTCH1-221ENST00000550914 GCLCP48506 637 aaPredicted RBP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 FLT3LGP49771 235 aa15.81■□□□□ 0.12
PTCH1-221ENST00000550914 PABPC4Q13310 644 aaKnown RBP eCLIP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 TEX11Q8IYF3 940 aa15.81■□□□□ 0.12
PTCH1-221ENST00000550914 ZNF280CQ8ND82 737 aa15.81■□□□□ 0.12
PTCH1-221ENST00000550914 U2AF1L4Q8WU68 220 aaKnown RBP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 NOL10Q9BSC4 688 aaKnown RBP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 DHX36Q9H2U1 1008 aaKnown RBP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 LRP2BPQ9P2M1 347 aa15.81■□□□□ 0.12
PTCH1-221ENST00000550914 MYO5AQ9Y4I1 1855 aaKnown RBP15.81■□□□□ 0.12
PTCH1-221ENST00000550914 SIPA1L1O43166 1804 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 BCAR3O75815 825 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 SGPL1O95470 568 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 BAG3O95817 575 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 SPP2Q13103 211 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 POLA2Q14181 598 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 TREML2Q5T2D2 321 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 DPF3Q92784 378 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 FRAT1Q92837 279 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-221ENST00000550914 COA7Q96BR5 231 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 UNC93B1Q9H1C4 597 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-221ENST00000550914 PI4KBQ9UBF8 816 aa15.8■□□□□ 0.12
PTCH1-221ENST00000550914 FAM196BA6NMK8 535 aa15.79■□□□□ 0.12
PTCH1-221ENST00000550914 USP17L5A8MUK1 530 aa15.79■□□□□ 0.12
PTCH1-221ENST00000550914 PPP4CP60510 307 aa15.79■□□□□ 0.12
PTCH1-221ENST00000550914 SH3D19Q5HYK7 790 aa15.79■□□□□ 0.12
PTCH1-221ENST00000550914 CCDC84Q86UT8 332 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-221ENST00000550914 ANKRD13CQ8N6S4 541 aa15.79■□□□□ 0.12
PTCH1-221ENST00000550914 ZNF512BQ96KM6 892 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-221ENST00000550914 AS3MTQ9HBK9 375 aa15.79■□□□□ 0.12
PTCH1-221ENST00000550914 FARP2O94887 1054 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-221ENST00000550914 INHAP05111 366 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 ELNP15502 786 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 TNNI3KQ59H18 835 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 CCDC158Q5M9N0 1113 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 ZKSCAN2Q63HK3 967 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 NAA16Q6N069 864 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-221ENST00000550914 METTL16Q86W50 562 aaKnown RBP15.78■□□□□ 0.12
PTCH1-221ENST00000550914 SSH3Q8TE77 659 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 SH3RF3Q8TEJ3 882 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-221ENST00000550914 CLUAP1Q96AJ1 413 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 WDR18Q9BV38 432 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 PAK6Q9NQU5 681 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-221ENST00000550914 GINM1Q9NU53 330 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 FPGT-TNNI3KV9GXZ4 949 aa15.78■□□□□ 0.12
PTCH1-221ENST00000550914 ASNSP08243 561 aa15.77■□□□□ 0.12
PTCH1-221ENST00000550914 HMGCS2P54868 508 aa15.77■□□□□ 0.12
PTCH1-221ENST00000550914 TTC39AQ5SRH9 613 aa15.77■□□□□ 0.12
PTCH1-221ENST00000550914 TMEM57Q8N5G2 664 aa15.77■□□□□ 0.12
PTCH1-221ENST00000550914 TNNQ9UQP3 1299 aa15.77■□□□□ 0.12
PTCH1-221ENST00000550914 NR2E3Q9Y5X4 410 aa15.77■□□□□ 0.12
PTCH1-221ENST00000550914 MYH1P12882 1939 aa15.76■□□□□ 0.11
PTCH1-221ENST00000550914 ATP8B2P98198 1209 aa15.76■□□□□ 0.11
PTCH1-221ENST00000550914 RRP1BQ14684 758 aaKnown RBP15.76■□□□□ 0.11
PTCH1-221ENST00000550914 CHRDL2Q6WN34 429 aa15.76■□□□□ 0.11
PTCH1-221ENST00000550914 FOXP4Q8IVH2 680 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-221ENST00000550914 CRISPLD2Q9H0B8 497 aa15.76■□□□□ 0.11
PTCH1-221ENST00000550914 ASCC2Q9H1I8 757 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-221ENST00000550914 AATFQ9NY61 560 aaKnown RBP eCLIP15.76■□□□□ 0.11
PTCH1-221ENST00000550914 PLXNB2O15031 1838 aa15.75■□□□□ 0.11
PTCH1-221ENST00000550914 CYP2E1P05181 493 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-221ENST00000550914 HOXA7P31268 230 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-221ENST00000550914 BACE1P56817 501 aa15.75■□□□□ 0.11
PTCH1-221ENST00000550914 OS9Q13438 667 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-221ENST00000550914 CERS3Q8IU89 383 aa15.75■□□□□ 0.11
PTCH1-221ENST00000550914 DBNDD2Q9BQY9 259 aa15.75■□□□□ 0.11
PTCH1-221ENST00000550914 SNRKQ9NRH2 765 aa15.75■□□□□ 0.11
PTCH1-221ENST00000550914 MORF4L1Q9UBU8 362 aa15.75■□□□□ 0.11
PTCH1-221ENST00000550914 NOP58Q9Y2X3 529 aaKnown RBP15.75■□□□□ 0.11
PTCH1-221ENST00000550914 ALPK3Q96L96 1907 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 FLT1P17948 1338 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 C19orf81C9J6K1 198 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 TFRCP02786 760 aaKnown RBP15.74■□□□□ 0.11
PTCH1-221ENST00000550914 HMGCRP04035 888 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 TMED8Q6PL24 325 aaPredicted RBP15.74■□□□□ 0.11
PTCH1-221ENST00000550914 TGFBRAP1Q8WUH2 860 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 DEFB118Q96PH6 123 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 PRO3102Q9H379 93 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 LAMA3Q16787 3333 aa15.74■□□□□ 0.11
PTCH1-221ENST00000550914 ZBTB7BO15156 539 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-221ENST00000550914 SURF6O75683 361 aaKnown RBP15.73■□□□□ 0.11
PTCH1-221ENST00000550914 IRX3P78415 501 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-221ENST00000550914 MTMR2Q13614 643 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms