RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 PTPN18Q99952 460 aa9.53□□□□□ -0.88
NEK3-201ENST00000550331 SPDYE5A6NIY4 337 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 DLL1O00548 723 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 CT47B1P0C2W7 299 aaPredicted RBP9.52□□□□□ -0.89
NEK3-201ENST00000550331 SLC5A1P13866 664 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 GGCXP38435 758 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 RFX5P48382 616 aaPredicted RBP9.52□□□□□ -0.89
NEK3-201ENST00000550331 GTF2A2P52657 109 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 CAP1Q01518 475 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 APOBEC3HQ6NTF7 200 aaKnown RBP9.52□□□□□ -0.89
NEK3-201ENST00000550331 HHIPL2Q6UWX4 724 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 WDR66Q8TBY9 1149 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 SMC4Q9NTJ3 1288 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 PTCH2Q9Y6C5 1203 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 ZSWIM8A7E2V4 1837 aa9.52□□□□□ -0.89
NEK3-201ENST00000550331 CCL15-CCL14A0A0B4J2E2 113 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 CIAO1O76071 339 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 MYCP01106 439 aaPredicted RBP9.51□□□□□ -0.89
NEK3-201ENST00000550331 CACNB3P54284 484 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 INSM1Q01101 510 aaPredicted RBP9.51□□□□□ -0.89
NEK3-201ENST00000550331 ARHGEF6Q15052 776 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 CCL15Q16663 113 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 TRMT2AQ8IZ69 625 aaKnown RBP9.51□□□□□ -0.89
NEK3-201ENST00000550331 BRI3BPQ8WY22 251 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 ZFYVE28Q9HCC9 887 aa9.51□□□□□ -0.89
NEK3-201ENST00000550331 ZCCHC17Q9NP64 241 aaKnown RBP9.51□□□□□ -0.89
NEK3-201ENST00000550331 CUL9Q8IWT3 2517 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 RANBP2P49792 3224 aaKnown RBP9.5□□□□□ -0.89
NEK3-201ENST00000550331 WDHD1O75717 1129 aaPredicted RBP9.5□□□□□ -0.89
NEK3-201ENST00000550331 UBTFL1P0CB47 393 aaPredicted RBP9.5□□□□□ -0.89
NEK3-201ENST00000550331 DCAF15Q66K64 600 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 ATG9AQ7Z3C6 839 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 ERO1BQ86YB8 467 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 SLC17A8Q8NDX2 589 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 CDCA7LQ96GN5 454 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 WRNIP1Q96S55 665 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 HDAC5Q9UQL6 1122 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 SNCAIPQ9Y6H5 919 aa9.5□□□□□ -0.89
NEK3-201ENST00000550331 SEMA3EO15041 775 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 WFS1O76024 890 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 CETPP11597 493 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 IL15P40933 162 aaPredicted RBP9.49□□□□□ -0.89
NEK3-201ENST00000550331 PPIL2Q13356 520 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 SNAPC2Q13487 334 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 TAF1CQ15572 869 aaPredicted RBP9.49□□□□□ -0.89
NEK3-201ENST00000550331 FAM43AQ8N2R8 423 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 SH3TC2Q8TF17 1288 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 FAM151AQ8WW52 585 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 ZNF341Q9BYN7 854 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 API5Q9BZZ5 524 aaKnown RBP9.49□□□□□ -0.89
NEK3-201ENST00000550331 GNL3LQ9NVN8 582 aaKnown RBP9.49□□□□□ -0.89
NEK3-201ENST00000550331 CEP126Q9P2H0 1117 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 SALL1Q9NSC2 1324 aa9.49□□□□□ -0.89
NEK3-201ENST00000550331 IRF6O14896 467 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 WIPF1O43516 503 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 TLR2O60603 784 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 ECM2O94769 699 aaPredicted RBP9.48□□□□□ -0.89
NEK3-201ENST00000550331 PPATQ06203 517 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 ATP2B3Q16720 1220 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 DPF3Q92784 378 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 ZKSCAN4Q969J2 545 aaPredicted RBP9.48□□□□□ -0.89
NEK3-201ENST00000550331 TMUB1Q9BVT8 246 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 COPRSQ9NQ92 184 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 RBM27Q9P2N5 1060 aaKnown RBP9.48□□□□□ -0.89
NEK3-201ENST00000550331 DAGLAQ9Y4D2 1042 aa9.48□□□□□ -0.89
NEK3-201ENST00000550331 GNRH1P01148 92 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 LDHBP07195 334 aaKnown RBP9.47□□□□□ -0.89
NEK3-201ENST00000550331 PRDX5P30044 214 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 PRR20EP86478 221 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 PRR20CP86479 221 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 PRR20DP86480 221 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 PRR20BP86481 221 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 PRR20AP86496 221 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 DIXDC1Q155Q3 683 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 CDC42EP5Q6NZY7 148 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 ZGPATQ8N5A5 531 aaKnown RBP9.47□□□□□ -0.89
NEK3-201ENST00000550331 ZNF516Q92618 1163 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 SIL1Q9H173 461 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 ZNF112Q9UJU3 913 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 DENND2AQ9ULE3 1009 aa9.47□□□□□ -0.89
NEK3-201ENST00000550331 NOB1Q9ULX3 412 aaKnown RBP9.47□□□□□ -0.89
NEK3-201ENST00000550331 LRRFIP2Q9Y608 721 aaKnown RBP9.47□□□□□ -0.89
NEK3-201ENST00000550331 PDS5AQ29RF7 1337 aaKnown RBP9.47□□□□□ -0.89
NEK3-201ENST00000550331 COL6A3P12111 3177 aa9.46□□□□□ -0.89
NEK3-201ENST00000550331 BTBD19C9JJ37 291 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 INPP5BP32019 993 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 LACTBP83111 547 aaPredicted RBP9.46□□□□□ -0.9
NEK3-201ENST00000550331 NFIAQ12857 509 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 KIF22Q14807 665 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 NOL9Q5SY16 702 aaKnown RBP9.46□□□□□ -0.9
NEK3-201ENST00000550331 CCDC102BQ68D86 513 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 MIGA2Q7L4E1 593 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 ARHGAP45Q92619 1136 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 FAM198AQ9UFP1 575 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 KCNH4Q9UQ05 1017 aa9.46□□□□□ -0.9
NEK3-201ENST00000550331 GNAI3P08754 354 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 PHKA1P46020 1223 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 PRMT2P55345 433 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 TCP10Q12799 353 aa9.45□□□□□ -0.9
NEK3-201ENST00000550331 MTX1Q13505 466 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms