RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 HAND2P61296 217 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 PPARAQ07869 468 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 STK11IPQ8N1F8 1099 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 CRACR2BQ8N4Y2 399 aaPredicted RBP25.25■■□□□ 1.63
VPS29-206ENST00000549578 HOOK2Q96ED9 719 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 EHD4Q9H223 541 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 DNAJC18Q9H819 358 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 SERPINB13Q9UIV8 391 aa25.25■■□□□ 1.63
VPS29-206ENST00000549578 REC8O95072 547 aa25.24■■□□□ 1.63
VPS29-206ENST00000549578 CST9Q5W186 159 aa25.24■■□□□ 1.63
VPS29-206ENST00000549578 DCAF15Q66K64 600 aa25.24■■□□□ 1.63
VPS29-206ENST00000549578 FOXP4Q8IVH2 680 aaPredicted RBP25.24■■□□□ 1.63
VPS29-206ENST00000549578 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.24■■□□□ 1.63
VPS29-206ENST00000549578 RBM8AQ9Y5S9 174 aaKnown RBP25.24■■□□□ 1.63
VPS29-206ENST00000549578 U3KPZ7 1027 aaPredicted RBP25.24■■□□□ 1.63
VPS29-206ENST00000549578 GABPAQ06546 454 aa25.23■■□□□ 1.63
VPS29-206ENST00000549578 MOB2Q70IA6 237 aa25.23■■□□□ 1.63
VPS29-206ENST00000549578 METTL16Q86W50 562 aaKnown RBP25.23■■□□□ 1.63
VPS29-206ENST00000549578 SLC44A5Q8NCS7 719 aa25.23■■□□□ 1.63
VPS29-206ENST00000549578 TRIM34Q9BYJ4 488 aa25.23■■□□□ 1.63
VPS29-206ENST00000549578 CTNNA3Q9UI47 895 aa25.23■■□□□ 1.63
VPS29-206ENST00000549578 HERC5Q9UII4 1024 aaKnown RBP25.23■■□□□ 1.63
VPS29-206ENST00000549578 MAP3K10Q02779 954 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 CTDSPL2Q05D32 466 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 TTLL12Q14166 644 aaPredicted RBP25.22■■□□□ 1.63
VPS29-206ENST00000549578 LAMA4Q16363 1823 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 ROBO3Q96MS0 1386 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 PPP1R12BO60237 982 aaPredicted RBP25.22■■□□□ 1.63
VPS29-206ENST00000549578 TBC1D12O60347 775 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 USP2O75604 605 aaPredicted RBP25.22■■□□□ 1.63
VPS29-206ENST00000549578 SEC24BO95487 1268 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 ZNF341Q9BYN7 854 aa25.22■■□□□ 1.63
VPS29-206ENST00000549578 GBA2Q9HCG7 927 aaPredicted RBP25.22■■□□□ 1.63
VPS29-206ENST00000549578 ANGEL1Q9UNK9 670 aaKnown RBP25.22■■□□□ 1.63
VPS29-206ENST00000549578 ZNF213O14771 459 aa25.21■■□□□ 1.63
VPS29-206ENST00000549578 NBPF3Q9H094 633 aa25.21■■□□□ 1.63
VPS29-206ENST00000549578 ANAPC4Q9UJX5 808 aa25.21■■□□□ 1.63
VPS29-206ENST00000549578 PAPPA2Q9BXP8 1791 aa25.2■■□□□ 1.62
VPS29-206ENST00000549578 IMMTQ16891 758 aaKnown RBP25.2■■□□□ 1.62
VPS29-206ENST00000549578 C16orf86Q6ZW13 317 aa25.2■■□□□ 1.62
VPS29-206ENST00000549578 SHMT1P34896 483 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 CDK8P49336 464 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 TBC1D10CQ8IV04 446 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 KLRG1Q96E93 195 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 WRNIP1Q96S55 665 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 INCENPQ9NQS7 918 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 TACC3Q9Y6A5 838 aa25.19■■□□□ 1.62
VPS29-206ENST00000549578 PHF20L1A8MW92 1017 aa25.18■■□□□ 1.62
VPS29-206ENST00000549578 CYP21A2P08686 494 aa25.18■■□□□ 1.62
VPS29-206ENST00000549578 ARMC9Q7Z3E5 817 aa25.18■■□□□ 1.62
VPS29-206ENST00000549578 C2orf69Q8N8R5 385 aa25.18■■□□□ 1.62
VPS29-206ENST00000549578 SWAP70Q9UH65 585 aa25.18■■□□□ 1.62
VPS29-206ENST00000549578 TAF6LQ9Y6J9 622 aa25.18■■□□□ 1.62
VPS29-206ENST00000549578 UBE2Q2LH0YL09 131 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 PRDM1O75626 825 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 SLC3A2P08195 630 aaKnown RBP25.17■■□□□ 1.62
VPS29-206ENST00000549578 INPP5BP32019 993 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 IREB2P48200 963 aaKnown RBP25.17■■□□□ 1.62
VPS29-206ENST00000549578 RRP1BQ14684 758 aaKnown RBP25.17■■□□□ 1.62
VPS29-206ENST00000549578 NECTIN1Q15223 517 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.17■■□□□ 1.62
VPS29-206ENST00000549578 OTOFQ9HC10 1997 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 FKBP1BP68106 108 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 MAP3K11Q16584 847 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 CREB3L3Q68CJ9 461 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 TATDN1Q6P1N9 297 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 USP26Q9BXU7 913 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 ZNF112Q9UJU3 913 aa25.17■■□□□ 1.62
VPS29-206ENST00000549578 SLC27A2O14975 620 aa25.16■■□□□ 1.62
VPS29-206ENST00000549578 MYH8P13535 1937 aa25.16■■□□□ 1.62
VPS29-206ENST00000549578 ZKSCAN4Q969J2 545 aaPredicted RBP25.16■■□□□ 1.62
VPS29-206ENST00000549578 MKNK2Q9HBH9 465 aa25.16■■□□□ 1.62
VPS29-206ENST00000549578 TMEM88BA6NKF7 163 aa25.15■■□□□ 1.62
VPS29-206ENST00000549578 GDF11O95390 407 aa25.15■■□□□ 1.62
VPS29-206ENST00000549578 PDE4BQ07343 736 aa25.15■■□□□ 1.62
VPS29-206ENST00000549578 SHROOM1Q2M3G4 852 aaPredicted RBP25.15■■□□□ 1.62
VPS29-206ENST00000549578 AKNAD1Q5T1N1 836 aa25.15■■□□□ 1.62
VPS29-206ENST00000549578 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.15■■□□□ 1.62
VPS29-206ENST00000549578 TAOK2Q9UL54 1235 aa25.15■■□□□ 1.62
VPS29-206ENST00000549578 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.15■■□□□ 1.62
VPS29-206ENST00000549578 MAP3K9P80192 1104 aa25.14■■□□□ 1.62
VPS29-206ENST00000549578 CERKLQ49MI3 558 aaPredicted RBP25.14■■□□□ 1.62
VPS29-206ENST00000549578 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.14■■□□□ 1.62
VPS29-206ENST00000549578 STAG1Q8WVM7 1258 aa25.14■■□□□ 1.62
VPS29-206ENST00000549578 RASA1P20936 1047 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 APLP1P51693 650 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 JAG1P78504 1218 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 LDLRAD1Q5T700 205 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 MFSD6Q6ZSS7 791 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 CLMNQ96JQ2 1002 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 ZNF287Q9HBT7 754 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 TOMM22Q9NS69 142 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 NEDD4P46934 1319 aa25.13■■□□□ 1.61
VPS29-206ENST00000549578 EPB41L2O43491 1005 aaKnown RBP25.12■■□□□ 1.61
VPS29-206ENST00000549578 EIF5BO60841 1220 aaKnown RBP25.12■■□□□ 1.61
VPS29-206ENST00000549578 HSPA4P34932 840 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 CAP2P40123 477 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 HUNKP57058 714 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 VGLL4Q14135 290 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 RRP12Q5JTH9 1297 aaKnown RBP25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms