RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 GPR108Q9NPR9 543 aa15.83■□□□□ 0.12
PTCH1-218ENST00000548945 HERC5Q9UII4 1024 aaKnown RBP15.83■□□□□ 0.12
PTCH1-218ENST00000548945 COLQQ9Y215 455 aaPredicted RBP15.83■□□□□ 0.12
PTCH1-218ENST00000548945 PNMA6EA0A0J9YXQ4 647 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 ADCY3O60266 1144 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 SLURP2P0DP57 97 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 MCAMP43121 646 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 FAM110CQ1W6H9 321 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 TBC1D9Q6ZT07 1266 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 HTATIP2Q9BUP3 242 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 RAI14Q9P0K7 980 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 GABRQQ9UN88 632 aa15.82■□□□□ 0.12
PTCH1-218ENST00000548945 TNPO2O14787 897 aaKnown RBP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 PLCG2P16885 1265 aa15.81■□□□□ 0.12
PTCH1-218ENST00000548945 CAP2P40123 477 aa15.81■□□□□ 0.12
PTCH1-218ENST00000548945 GCLCP48506 637 aaPredicted RBP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 FLT3LGP49771 235 aa15.81■□□□□ 0.12
PTCH1-218ENST00000548945 PABPC4Q13310 644 aaKnown RBP eCLIP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 TEX11Q8IYF3 940 aa15.81■□□□□ 0.12
PTCH1-218ENST00000548945 ZNF280CQ8ND82 737 aa15.81■□□□□ 0.12
PTCH1-218ENST00000548945 U2AF1L4Q8WU68 220 aaKnown RBP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 NOL10Q9BSC4 688 aaKnown RBP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 DHX36Q9H2U1 1008 aaKnown RBP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 LRP2BPQ9P2M1 347 aa15.81■□□□□ 0.12
PTCH1-218ENST00000548945 MYO5AQ9Y4I1 1855 aaKnown RBP15.81■□□□□ 0.12
PTCH1-218ENST00000548945 SIPA1L1O43166 1804 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 BCAR3O75815 825 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 SGPL1O95470 568 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 BAG3O95817 575 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 SPP2Q13103 211 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 POLA2Q14181 598 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 TREML2Q5T2D2 321 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 DPF3Q92784 378 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 FRAT1Q92837 279 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-218ENST00000548945 COA7Q96BR5 231 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 UNC93B1Q9H1C4 597 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.8■□□□□ 0.12
PTCH1-218ENST00000548945 PI4KBQ9UBF8 816 aa15.8■□□□□ 0.12
PTCH1-218ENST00000548945 FAM196BA6NMK8 535 aa15.79■□□□□ 0.12
PTCH1-218ENST00000548945 USP17L5A8MUK1 530 aa15.79■□□□□ 0.12
PTCH1-218ENST00000548945 PPP4CP60510 307 aa15.79■□□□□ 0.12
PTCH1-218ENST00000548945 SH3D19Q5HYK7 790 aa15.79■□□□□ 0.12
PTCH1-218ENST00000548945 CCDC84Q86UT8 332 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-218ENST00000548945 ANKRD13CQ8N6S4 541 aa15.79■□□□□ 0.12
PTCH1-218ENST00000548945 ZNF512BQ96KM6 892 aaPredicted RBP15.79■□□□□ 0.12
PTCH1-218ENST00000548945 AS3MTQ9HBK9 375 aa15.79■□□□□ 0.12
PTCH1-218ENST00000548945 FARP2O94887 1054 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-218ENST00000548945 INHAP05111 366 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 ELNP15502 786 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 TNNI3KQ59H18 835 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 CCDC158Q5M9N0 1113 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 ZKSCAN2Q63HK3 967 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 NAA16Q6N069 864 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-218ENST00000548945 METTL16Q86W50 562 aaKnown RBP15.78■□□□□ 0.12
PTCH1-218ENST00000548945 SSH3Q8TE77 659 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 SH3RF3Q8TEJ3 882 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-218ENST00000548945 CLUAP1Q96AJ1 413 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 WDR18Q9BV38 432 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 PAK6Q9NQU5 681 aaPredicted RBP15.78■□□□□ 0.12
PTCH1-218ENST00000548945 GINM1Q9NU53 330 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 FPGT-TNNI3KV9GXZ4 949 aa15.78■□□□□ 0.12
PTCH1-218ENST00000548945 ASNSP08243 561 aa15.77■□□□□ 0.12
PTCH1-218ENST00000548945 HMGCS2P54868 508 aa15.77■□□□□ 0.12
PTCH1-218ENST00000548945 TTC39AQ5SRH9 613 aa15.77■□□□□ 0.12
PTCH1-218ENST00000548945 TMEM57Q8N5G2 664 aa15.77■□□□□ 0.12
PTCH1-218ENST00000548945 TNNQ9UQP3 1299 aa15.77■□□□□ 0.12
PTCH1-218ENST00000548945 NR2E3Q9Y5X4 410 aa15.77■□□□□ 0.12
PTCH1-218ENST00000548945 MYH1P12882 1939 aa15.76■□□□□ 0.11
PTCH1-218ENST00000548945 ATP8B2P98198 1209 aa15.76■□□□□ 0.11
PTCH1-218ENST00000548945 RRP1BQ14684 758 aaKnown RBP15.76■□□□□ 0.11
PTCH1-218ENST00000548945 CHRDL2Q6WN34 429 aa15.76■□□□□ 0.11
PTCH1-218ENST00000548945 FOXP4Q8IVH2 680 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-218ENST00000548945 CRISPLD2Q9H0B8 497 aa15.76■□□□□ 0.11
PTCH1-218ENST00000548945 ASCC2Q9H1I8 757 aaPredicted RBP15.76■□□□□ 0.11
PTCH1-218ENST00000548945 AATFQ9NY61 560 aaKnown RBP eCLIP15.76■□□□□ 0.11
PTCH1-218ENST00000548945 PLXNB2O15031 1838 aa15.75■□□□□ 0.11
PTCH1-218ENST00000548945 CYP2E1P05181 493 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-218ENST00000548945 HOXA7P31268 230 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-218ENST00000548945 BACE1P56817 501 aa15.75■□□□□ 0.11
PTCH1-218ENST00000548945 OS9Q13438 667 aaPredicted RBP15.75■□□□□ 0.11
PTCH1-218ENST00000548945 CERS3Q8IU89 383 aa15.75■□□□□ 0.11
PTCH1-218ENST00000548945 DBNDD2Q9BQY9 259 aa15.75■□□□□ 0.11
PTCH1-218ENST00000548945 SNRKQ9NRH2 765 aa15.75■□□□□ 0.11
PTCH1-218ENST00000548945 MORF4L1Q9UBU8 362 aa15.75■□□□□ 0.11
PTCH1-218ENST00000548945 NOP58Q9Y2X3 529 aaKnown RBP15.75■□□□□ 0.11
PTCH1-218ENST00000548945 ALPK3Q96L96 1907 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 FLT1P17948 1338 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 C19orf81C9J6K1 198 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 TFRCP02786 760 aaKnown RBP15.74■□□□□ 0.11
PTCH1-218ENST00000548945 HMGCRP04035 888 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 DIEXFQ68CQ4 756 aaKnown RBP15.74■□□□□ 0.11
PTCH1-218ENST00000548945 TMED8Q6PL24 325 aaPredicted RBP15.74■□□□□ 0.11
PTCH1-218ENST00000548945 TGFBRAP1Q8WUH2 860 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 DEFB118Q96PH6 123 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 PRO3102Q9H379 93 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 LAMA3Q16787 3333 aa15.74■□□□□ 0.11
PTCH1-218ENST00000548945 ZBTB7BO15156 539 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-218ENST00000548945 SURF6O75683 361 aaKnown RBP15.73■□□□□ 0.11
PTCH1-218ENST00000548945 IRX3P78415 501 aaPredicted RBP15.73■□□□□ 0.11
PTCH1-218ENST00000548945 MTMR2Q13614 643 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms