RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 DYNLL1P63167 89 aaKnown RBP16.33■□□□□ 0.2
CPSF6-204ENST00000547486 JAG1P78504 1218 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 SPP2Q13103 211 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 NBPF11Q86T75 865 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 SIRT2Q8IXJ6 389 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 PARK7Q99497 189 aaKnown RBP16.33■□□□□ 0.2
CPSF6-204ENST00000547486 NOL10Q9BSC4 688 aaKnown RBP16.33■□□□□ 0.2
CPSF6-204ENST00000547486 PI4KBQ9UBF8 816 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 SRRDQ9UH36 339 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 COG6Q9Y2V7 657 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 ZSWIM8A7E2V4 1837 aa16.33■□□□□ 0.2
CPSF6-204ENST00000547486 FMNL1O95466 1100 aaPredicted RBP16.32■□□□□ 0.2
CPSF6-204ENST00000547486 COL2A1P02458 1487 aaPredicted RBP16.32■□□□□ 0.2
CPSF6-204ENST00000547486 CYP7A1P22680 504 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 TREML2Q5T2D2 321 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 AACSQ86V21 672 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 DOCK2Q92608 1830 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 DNAJC18Q9H819 358 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 IL1RAPL2Q9NP60 686 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 ZBTB40Q9NUA8 1239 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 PALD1Q9ULE6 856 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 SLC45A1Q9Y2W3 748 aa16.32■□□□□ 0.2
CPSF6-204ENST00000547486 FLT1P17948 1338 aa16.31■□□□□ 0.2
CPSF6-204ENST00000547486 PLCG2P16885 1265 aa16.31■□□□□ 0.2
CPSF6-204ENST00000547486 PRMT2P55345 433 aa16.31■□□□□ 0.2
CPSF6-204ENST00000547486 ERC1Q8IUD2 1116 aa16.31■□□□□ 0.2
CPSF6-204ENST00000547486 RHPN1Q8TCX5 695 aa16.31■□□□□ 0.2
CPSF6-204ENST00000547486 TMEM106CQ9BVX2 250 aa16.31■□□□□ 0.2
CPSF6-204ENST00000547486 DHX36Q9H2U1 1008 aaKnown RBP16.31■□□□□ 0.2
CPSF6-204ENST00000547486 HERC5Q9UII4 1024 aaKnown RBP16.31■□□□□ 0.2
CPSF6-204ENST00000547486 IGSF3O75054 1194 aa16.3■□□□□ 0.2
CPSF6-204ENST00000547486 IDH1O75874 414 aaKnown RBP16.3■□□□□ 0.2
CPSF6-204ENST00000547486 MS4A1P11836 297 aa16.3■□□□□ 0.2
CPSF6-204ENST00000547486 SHROOM1Q2M3G4 852 aaPredicted RBP16.3■□□□□ 0.2
CPSF6-204ENST00000547486 PRPF38BQ5VTL8 546 aaKnown RBP16.3■□□□□ 0.2
CPSF6-204ENST00000547486 METTL16Q86W50 562 aaKnown RBP16.3■□□□□ 0.2
CPSF6-204ENST00000547486 MIGA1Q8NAN2 632 aa16.3■□□□□ 0.2
CPSF6-204ENST00000547486 ZNF280CQ8ND82 737 aa16.3■□□□□ 0.2
CPSF6-204ENST00000547486 SAP30BPQ9UHR5 308 aaKnown RBP16.3■□□□□ 0.2
CPSF6-204ENST00000547486 AGTPBP1Q9UPW5 1226 aa16.3■□□□□ 0.2
CPSF6-204ENST00000547486 USP17L5A8MUK1 530 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 APBB1O00213 710 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 HOXD10P28358 340 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 SLC4A8Q2Y0W8 1093 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 FOXP4Q8IVH2 680 aaPredicted RBP16.29■□□□□ 0.2
CPSF6-204ENST00000547486 RPAP2Q8IXW5 612 aaPredicted RBP16.29■□□□□ 0.2
CPSF6-204ENST00000547486 MAGEB6Q8N7X4 407 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 RCAN3Q9UKA8 241 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 GABRQQ9UN88 632 aa16.29■□□□□ 0.2
CPSF6-204ENST00000547486 MYPNQ86TC9 1320 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 HMGCS2P54868 508 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 FCGRTP55899 365 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 PRKCZQ05513 592 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 MTFR1Q15390 333 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 HSP90AB4PQ58FF6 505 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 C20orf194Q5TEA3 1177 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 DDX19BQ9UMR2 479 aa16.28■□□□□ 0.2
CPSF6-204ENST00000547486 PHIPQ8WWQ0 1821 aa16.27■□□□□ 0.2
CPSF6-204ENST00000547486 PDE4DIPQ5VU43 2346 aa16.27■□□□□ 0.2
CPSF6-204ENST00000547486 ANKRD13CQ8N6S4 541 aa16.27■□□□□ 0.2
CPSF6-204ENST00000547486 PROCA1Q8NCQ7 364 aaPredicted RBP16.27■□□□□ 0.2
CPSF6-204ENST00000547486 RAET1EQ8TD07 263 aa16.27■□□□□ 0.2
CPSF6-204ENST00000547486 SMCR8Q8TEV9 937 aaPredicted RBP16.27■□□□□ 0.2
CPSF6-204ENST00000547486 WDR18Q9BV38 432 aa16.27■□□□□ 0.2
CPSF6-204ENST00000547486 DOCK1Q14185 1865 aa16.27■□□□□ 0.19
CPSF6-204ENST00000547486 GDF11O95390 407 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 SLC34A2O95436 690 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 GRK4P32298 578 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 MAP3K12Q12852 859 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 SH3D19Q5HYK7 790 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 CLASRPQ8N2M8 674 aaKnown RBP16.26■□□□□ 0.19
CPSF6-204ENST00000547486 CRACR2BQ8N4Y2 399 aaPredicted RBP16.26■□□□□ 0.19
CPSF6-204ENST00000547486 KIF1BPQ96EK5 621 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 TBC1D2Q9BYX2 928 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 BCL11AQ9H165 835 aa16.26■□□□□ 0.19
CPSF6-204ENST00000547486 KIAA0100Q14667 2235 aaKnown RBP16.26■□□□□ 0.19
CPSF6-204ENST00000547486 BACE1P56817 501 aa16.25■□□□□ 0.19
CPSF6-204ENST00000547486 RIOK1Q9BRS2 568 aaKnown RBP16.25■□□□□ 0.19
CPSF6-204ENST00000547486 AS3MTQ9HBK9 375 aa16.25■□□□□ 0.19
CPSF6-204ENST00000547486 MYO5AQ9Y4I1 1855 aaKnown RBP16.25■□□□□ 0.19
CPSF6-204ENST00000547486 SIPA1L1O43166 1804 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 HMMRO75330 724 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 ASNSP08243 561 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 USP5P45974 858 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 FLT3LGP49771 235 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 MTMR2Q13614 643 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 EDC3Q96F86 508 aaKnown RBP16.24■□□□□ 0.19
CPSF6-204ENST00000547486 ASCC2Q9H1I8 757 aaPredicted RBP16.24■□□□□ 0.19
CPSF6-204ENST00000547486 PNMA3Q9UL41 463 aa16.24■□□□□ 0.19
CPSF6-204ENST00000547486 TNPO2O14787 897 aaKnown RBP16.23■□□□□ 0.19
CPSF6-204ENST00000547486 PEX10O60683 326 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 RAB11FIP3O75154 756 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 HLA-DOAP06340 250 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 IFIT2P09913 472 aaKnown RBP16.23■□□□□ 0.19
CPSF6-204ENST00000547486 CCL5P13501 91 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 PDE6AP16499 860 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 SLC9C2Q5TAH2 1124 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 TATDN1Q6P1N9 297 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 SHISA4Q96DD7 197 aa16.23■□□□□ 0.19
CPSF6-204ENST00000547486 TRIM34Q9BYJ4 488 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms