RNA–Protein interactions for RNA: ENST00000545308.5

SNHG1-222, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 646 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-222	ENST00000545308	LNPK	Q9C0E8	428 aa		6.22	□□□□□ -1.41
SNHG1-222	ENST00000545308	EHD4	Q9H223	541 aa		6.22	□□□□□ -1.41
SNHG1-222	ENST00000545308	SLC5A6	Q9Y289	635 aa		6.22	□□□□□ -1.41
SNHG1-222	ENST00000545308	DAGLA	Q9Y4D2	1042 aa		6.22	□□□□□ -1.41
SNHG1-222	ENST00000545308	PAK2	Q13177	524 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	AP3B2	Q13367	1082 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	PDE3A	Q14432	1141 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	GIMAP6	Q6P9H5	292 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	MCF2L2	Q86YR7	1114 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	BCL7C	Q8WUZ0	217 aa	Predicted RBP	6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	SPATA32	Q96LK8	384 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	PUS7	Q96PZ0	661 aa	Known RBP	6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	PPP1R9A	Q9ULJ8	1098 aa		6.21	□□□□□ -1.42
SNHG1-222	ENST00000545308	C8A	P07357	584 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	GJA8	P48165	433 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	JAG1	P78504	1218 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	WFDC3	Q8IUB2	231 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	ARMC5	Q96C12	935 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	LGR6	Q9HBX8	967 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	KBTBD4	Q9NVX7	518 aa		6.2	□□□□□ -1.42
SNHG1-222	ENST00000545308	CADPS	Q9ULU8	1353 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	PAPLN	O95428	1278 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	FGR	P09769	529 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	GSTT1	P30711	240 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	RBL2	Q08999	1139 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	PLCL1	Q15111	1095 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	CYP27C1	Q4G0S4	372 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	LCE1D	Q5T752	114 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	ZNF574	Q6ZN55	896 aa	Predicted RBP	6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	SPRED2	Q7Z698	418 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	STK11IP	Q8N1F8	1099 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	ABCB6	Q9NP58	842 aa		6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	TTF2	Q9UNY4	1162 aa	Known RBP	6.19	□□□□□ -1.42
SNHG1-222	ENST00000545308	TMPRSS2	O15393	492 aa		6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	ATF4	P18848	351 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	FCGRT	P55899	365 aa		6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	PRPF40B	Q6NWY9	871 aa	Known RBP	6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	MISP3	Q96FF7	219 aa		6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	WDR89	Q96FK6	387 aa	Predicted RBP	6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	RSRP1	Q9BUV0	290 aa		6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	NOC4L	Q9BVI4	516 aa	Known RBP	6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	CRIM1	Q9NZV1	1036 aa		6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308	ADAMTS1	Q9UHI8	967 aa		6.18	□□□□□ -1.42
SNHG1-222	ENST00000545308		F6X3S4	739 aa		6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	LIG1	P18858	919 aa		6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	ZNF792	Q3KQV3	632 aa		6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	CCDC144B	Q3MJ40	725 aa		6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	GPRASP2	Q96D09	838 aa		6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	CCDC86	Q9H6F5	360 aa	Known RBP	6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	TRAK1	Q9UPV9	953 aa		6.17	□□□□□ -1.42
SNHG1-222	ENST00000545308	TMEM238L	A0A1B0GVL6	79 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	SLFN14	P0C7P3	912 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	FAM87A	P0C7U9	286 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	FAAP100	Q0VG06	881 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	BNIP3	Q12983	259 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	CDK5R2	Q13319	367 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	VPS37D	Q86XT2	251 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	PMFBP1	Q8TBY8	1022 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	NETO1	Q8TDF5	533 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	RASGRP4	Q8TDF6	673 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	ANKRD24	Q8TF21	1146 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	FANCD2OS	Q96PS1	177 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	SPON2	Q9BUD6	331 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	ATXN3L	Q9H3M9	355 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	PIDD1	Q9HB75	910 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	PPP4R2	Q9NY27	417 aa		6.16	□□□□□ -1.42
SNHG1-222	ENST00000545308	BIN1	O00499	593 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	ZNF862	O60290	1169 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	FBXO24	O75426	580 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	ZNF157	P51786	506 aa	Predicted RBP	6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	ID3	Q02535	119 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	CCDC85B	Q15834	202 aa	Predicted RBP	6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	KIF4B	Q2VIQ3	1234 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	SMYD4	Q8IYR2	804 aa	Predicted RBP	6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	PLD6	Q8N2A8	252 aa	Known RBP	6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	6.15	□□□□□ -1.42	7e-26	■□□□□ 11.3
SNHG1-222	ENST00000545308	ZC3H12C	Q9C0D7	883 aa	Known RBP	6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	PIF1	Q9H611	641 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	KRT82	Q9NSB4	513 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	PPM1H	Q9ULR3	514 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	PCDHGC5	Q9Y5F6	944 aa		6.15	□□□□□ -1.42
SNHG1-222	ENST00000545308	MINDY4B	A8MYZ0	360 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	CD8B	P10966	210 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	HSP90B1	P14625	803 aa	Known RBP	6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	FUT4	P22083	530 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	MAP3K11	Q16584	847 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	NOP9	Q86U38	636 aa	Known RBP	6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	KIAA0825	Q8IV33	1275 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	FAM181A	Q8N9Y4	354 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	EAF1	Q96JC9	268 aa	Predicted RBP	6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	TMEM74	Q96NL1	305 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	KRTAP4-7	Q9BYR0	210 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	DISC1	Q9NRI5	854 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	VAV3	Q9UKW4	847 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	AKAP2	Q9Y2D5	859 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	CARMIL2	Q6F5E8	1435 aa		6.14	□□□□□ -1.43
SNHG1-222	ENST00000545308	STK10	O94804	968 aa	Known RBP	6.13	□□□□□ -1.43
SNHG1-222	ENST00000545308	GSTP1	P09211	210 aa	Known RBP	6.13	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms