RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SPTY2D1Q68D10 685 aaPredicted RBP22.1■■□□□ 1.13
CLSTN3-214ENST00000542663 PROCA1Q8NCQ7 364 aaPredicted RBP22.1■■□□□ 1.13
CLSTN3-214ENST00000542663 XAGE2Q96GT9 111 aa22.1■■□□□ 1.13
CLSTN3-214ENST00000542663 FRMPD3Q5JV73 1810 aa22.1■■□□□ 1.13
CLSTN3-214ENST00000542663 A0A1B0GUL7 405 aa22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 NPM3O75607 178 aaKnown RBP22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 LRCH3Q96II8 777 aa22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 MEIS3Q99687 375 aa22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 STAP2Q9UGK3 403 aa22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 NOB1Q9ULX3 412 aaKnown RBP22.09■■□□□ 1.13
CLSTN3-214ENST00000542663 ZNF316A6NFI3 1004 aaPredicted RBP22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 SPP2Q13103 211 aa22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 RRP1BQ14684 758 aaKnown RBP22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 ERICH6Q7L0X2 663 aa22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 TRMT2AQ8IZ69 625 aaKnown RBP22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 OSBPL5Q9H0X9 879 aaPredicted RBP22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 XPO5Q9HAV4 1204 aaKnown RBP eCLIP22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 PNMA3Q9UL41 463 aa22.08■■□□□ 1.13
CLSTN3-214ENST00000542663 TFCP2Q12800 502 aa22.07■■□□□ 1.12
CLSTN3-214ENST00000542663 PI16Q6UXB8 463 aa22.07■■□□□ 1.12
CLSTN3-214ENST00000542663 GJD2Q9UKL4 321 aa22.07■■□□□ 1.12
CLSTN3-214ENST00000542663 HMGCS2P54868 508 aa22.06■■□□□ 1.12
CLSTN3-214ENST00000542663 TRIM32Q13049 653 aa22.06■■□□□ 1.12
CLSTN3-214ENST00000542663 NECAB2Q7Z6G3 386 aa22.06■■□□□ 1.12
CLSTN3-214ENST00000542663 ZNF280CQ8ND82 737 aa22.06■■□□□ 1.12
CLSTN3-214ENST00000542663 NSUN4Q96CB9 384 aaKnown RBP22.06■■□□□ 1.12
CLSTN3-214ENST00000542663 HMG20BQ9P0W2 317 aa22.06■■□□□ 1.12
CLSTN3-214ENST00000542663 HMGCRP04035 888 aa22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 CAP2P40123 477 aa22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 GCLCP48506 637 aaPredicted RBP22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 MNX1P50219 401 aaPredicted RBP22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 MVPQ14764 893 aaKnown RBP22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 GDF15Q99988 308 aa22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 ASCC2Q9H1I8 757 aaPredicted RBP22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 HDAC5Q9UQL6 1122 aa22.05■■□□□ 1.12
CLSTN3-214ENST00000542663 TBC1D9Q6ZT07 1266 aa22.04■■□□□ 1.12
CLSTN3-214ENST00000542663 ANKLE1Q8NAG6 615 aa22.04■■□□□ 1.12
CLSTN3-214ENST00000542663 API5Q9BZZ5 524 aaKnown RBP22.04■■□□□ 1.12
CLSTN3-214ENST00000542663 AKAP2Q9Y2D5 859 aa22.04■■□□□ 1.12
CLSTN3-214ENST00000542663 MYH1P12882 1939 aa22.04■■□□□ 1.12
CLSTN3-214ENST00000542663 MTX1Q13505 466 aa22.03■■□□□ 1.12
CLSTN3-214ENST00000542663 SH3D19Q5HYK7 790 aa22.03■■□□□ 1.12
CLSTN3-214ENST00000542663 SPATA5Q8NB90 893 aa22.03■■□□□ 1.12
CLSTN3-214ENST00000542663 SLC17A8Q8NDX2 589 aa22.03■■□□□ 1.12
CLSTN3-214ENST00000542663 TBC1D2Q9BYX2 928 aa22.03■■□□□ 1.12
CLSTN3-214ENST00000542663 RPTORQ8N122 1335 aa22.03■■□□□ 1.12
CLSTN3-214ENST00000542663 SRGAP3O43295 1099 aa22.02■■□□□ 1.12
CLSTN3-214ENST00000542663 MAP4K4O95819 1239 aaPredicted RBP22.02■■□□□ 1.12
CLSTN3-214ENST00000542663 BMP8BP34820 402 aa22.02■■□□□ 1.12
CLSTN3-214ENST00000542663 C7orf61Q8IZ16 206 aa22.02■■□□□ 1.12
CLSTN3-214ENST00000542663 NEUROD6Q96NK8 337 aa22.02■■□□□ 1.12
CLSTN3-214ENST00000542663 USP17L5A8MUK1 530 aa22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 DLL1O00548 723 aa22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 LDHCP07864 332 aa22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 ARID4AP29374 1257 aaPredicted RBP22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 GSTO1P78417 241 aa22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 PABPC4Q13310 644 aaKnown RBP eCLIP22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 TRIB2Q92519 343 aa22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 HMX1Q9NP08 348 aaPredicted RBP22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 MORF4L1Q9UBU8 362 aa22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 ZMYND8Q9ULU4 1186 aaPredicted RBP22.01■■□□□ 1.11
CLSTN3-214ENST00000542663 PEX10O60683 326 aa22■■□□□ 1.11
CLSTN3-214ENST00000542663 CT47B1P0C2W7 299 aaPredicted RBP22■■□□□ 1.11
CLSTN3-214ENST00000542663 A0A0C4DFX4 3053 aa22■■□□□ 1.11
CLSTN3-214ENST00000542663 MCAMP43121 646 aa21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 JAG1P78504 1218 aa21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 TEX11Q8IYF3 940 aa21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 SH3RF3Q8TEJ3 882 aaPredicted RBP21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 NBPF3Q9H094 633 aa21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 RAI14Q9P0K7 980 aa21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 HERC5Q9UII4 1024 aaKnown RBP21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 OGDHLQ9ULD0 1010 aa21.99■■□□□ 1.11
CLSTN3-214ENST00000542663 DNAH12Q6ZR08 3092 aa21.98■■□□□ 1.11
CLSTN3-214ENST00000542663 MTMR2Q13614 643 aa21.98■■□□□ 1.11
CLSTN3-214ENST00000542663 MAP3K21Q5TCX8 1036 aa21.98■■□□□ 1.11
CLSTN3-214ENST00000542663 WDR18Q9BV38 432 aa21.98■■□□□ 1.11
CLSTN3-214ENST00000542663 DNAJC18Q9H819 358 aa21.98■■□□□ 1.11
CLSTN3-214ENST00000542663 AS3MTQ9HBK9 375 aa21.98■■□□□ 1.11
CLSTN3-214ENST00000542663 GNAI3P08754 354 aa21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 SYN1P17600 705 aa21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 SHROOM1Q2M3G4 852 aaPredicted RBP21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 P2RX7Q99572 595 aaKnown RBP21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 C11orf49Q9H6J7 331 aa21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 TXNRD2Q9NNW7 524 aa21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 PFASO15067 1338 aa21.97■■□□□ 1.11
CLSTN3-214ENST00000542663 CYP2B6P20813 491 aa21.96■■□□□ 1.11
CLSTN3-214ENST00000542663 HOXA7P31268 230 aaPredicted RBP21.96■■□□□ 1.11
CLSTN3-214ENST00000542663 RARSP54136 660 aaKnown RBP21.96■■□□□ 1.11
CLSTN3-214ENST00000542663 BACE1P56817 501 aa21.96■■□□□ 1.11
CLSTN3-214ENST00000542663 GORABQ5T7V8 394 aa21.96■■□□□ 1.11
CLSTN3-214ENST00000542663 PI4KBQ9UBF8 816 aa21.96■■□□□ 1.11
CLSTN3-214ENST00000542663 PRKAR2AP13861 404 aaKnown RBP21.95■■□□□ 1.1
CLSTN3-214ENST00000542663 MAGEA10P43363 369 aaPredicted RBP21.95■■□□□ 1.1
CLSTN3-214ENST00000542663 IRX3P78415 501 aaPredicted RBP21.95■■□□□ 1.1
CLSTN3-214ENST00000542663 GPR153Q6NV75 609 aa21.95■■□□□ 1.1
CLSTN3-214ENST00000542663 ARHGAP45Q92619 1136 aa21.95■■□□□ 1.1
CLSTN3-214ENST00000542663 PNMA6EA0A0J9YXQ4 647 aa21.94■■□□□ 1.1
CLSTN3-214ENST00000542663 ASNSP08243 561 aa21.94■■□□□ 1.1
CLSTN3-214ENST00000542663 HERVK_113P62684 666 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms