RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 MTMR6Q9Y217 621 aa12.1□□□□□ -0.47
CHFR-219ENST00000541341 ARAP2Q8WZ64 1704 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 SNAP23O00161 211 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 ATP8B1O43520 1251 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 MYO1BO43795 1136 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 SLC34A2O95436 690 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 TNNT1P13805 278 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 CASTP20810 708 aaKnown RBP12.09□□□□□ -0.47
CHFR-219ENST00000541341 TPD52L1Q16890 204 aaPredicted RBP12.09□□□□□ -0.47
CHFR-219ENST00000541341 DACT2Q5SW24 774 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 ZNF771Q7L3S4 317 aaPredicted RBP12.09□□□□□ -0.47
CHFR-219ENST00000541341 PLA2G4DQ86XP0 818 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 KIAA0825Q8IV33 1275 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 ZNF710Q8N1W2 664 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 KIF18AQ8NI77 898 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 SPATA32Q96LK8 384 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 LLPHQ9BRT6 129 aaKnown RBP12.09□□□□□ -0.47
CHFR-219ENST00000541341 UPF3BQ9BZI7 483 aaKnown RBP12.09□□□□□ -0.47
CHFR-219ENST00000541341 ECHDC1Q9NTX5 307 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 SAGE1Q9NXZ1 904 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 JAG2Q9Y219 1238 aa12.09□□□□□ -0.47
CHFR-219ENST00000541341 MED23Q9ULK4 1368 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 F8W031 263 aaPredicted RBP12.08□□□□□ -0.48
CHFR-219ENST00000541341 WNT10BO00744 389 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 KCNJ4P48050 445 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 ZNF75DP51815 510 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 CBX1P83916 185 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 BMS1Q14692 1282 aaKnown RBP12.08□□□□□ -0.48
CHFR-219ENST00000541341 PTPN14Q15678 1187 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 ZRSR1Q15695 479 aaKnown RBP12.08□□□□□ -0.48
CHFR-219ENST00000541341 TEX35Q5T0J7 233 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 PODNQ7Z5L7 613 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 HELBQ8NG08 1087 aaPredicted RBP12.08□□□□□ -0.48
CHFR-219ENST00000541341 ZNF396Q96N95 335 aaPredicted RBP12.08□□□□□ -0.48
CHFR-219ENST00000541341 DDX41Q9UJV9 622 aaKnown RBP12.08□□□□□ -0.48
CHFR-219ENST00000541341 PCDHAC2Q9Y5I4 1007 aa12.08□□□□□ -0.48
CHFR-219ENST00000541341 TAF5LO75529 589 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 IFIT2P09913 472 aaKnown RBP12.07□□□□□ -0.48
CHFR-219ENST00000541341 IGHMBP2P38935 993 aaKnown RBP12.07□□□□□ -0.48
CHFR-219ENST00000541341 RFX5P48382 616 aaPredicted RBP12.07□□□□□ -0.48
CHFR-219ENST00000541341 ZNF165P49910 485 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 GTF2IP78347 998 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 STX1AQ16623 288 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 CEP135Q66GS9 1140 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 GIMAP6Q6P9H5 292 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 BLOC1S2Q6QNY1 142 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 LMBR1LQ6UX01 489 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 CTU1Q7Z7A3 348 aaKnown RBP12.07□□□□□ -0.48
CHFR-219ENST00000541341 PI4K2BQ8TCG2 481 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 R3HDMLQ9H3Y0 253 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 ANO10Q9NW15 660 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 BSDC1Q9NW68 430 aaPredicted RBP12.07□□□□□ -0.48
CHFR-219ENST00000541341 HDAC9Q9UKV0 1011 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 CHMP3Q9Y3E7 222 aa12.07□□□□□ -0.48
CHFR-219ENST00000541341 MYH13Q9UKX3 1938 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 ZNF609O15014 1411 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 VPS37CA5D8V6 355 aaPredicted RBP12.06□□□□□ -0.48
CHFR-219ENST00000541341 BECN2A8MW95 431 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 ITGA6P23229 1130 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 DNM1Q05193 864 aaKnown RBP12.06□□□□□ -0.48
CHFR-219ENST00000541341 PTPN12Q05209 780 aaKnown RBP12.06□□□□□ -0.48
CHFR-219ENST00000541341 OS9Q13438 667 aaPredicted RBP12.06□□□□□ -0.48
CHFR-219ENST00000541341 TTLL5Q6EMB2 1281 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 ZSCAN25Q6NSZ9 544 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 OGFOD1Q8N543 542 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 CCDC150Q8NCX0 1101 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 ZNF296Q8WUU4 475 aaPredicted RBP12.06□□□□□ -0.48
CHFR-219ENST00000541341 JAKMIP1Q96N16 626 aaKnown RBP12.06□□□□□ -0.48
CHFR-219ENST00000541341 MPHOSPH8Q99549 860 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 CLIP2Q9UDT6 1046 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 HPS5Q9UPZ3 1129 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 ZNF804BA4D1E1 1349 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 PITPNM2Q9BZ72 1349 aa12.06□□□□□ -0.48
CHFR-219ENST00000541341 LAMB1P07942 1786 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 ZSWIM8A7E2V4 1837 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 CENPFP49454 3210 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 PNMA6EA0A0J9YXQ4 647 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 SRGAP3O43295 1099 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 CHRNDQ07001 517 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 GPS2Q13227 327 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 NECTIN1Q15223 517 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 CCDC73Q6ZRK6 1079 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 MAP4K1Q92918 833 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 COPRSQ9NQ92 184 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 CTNNA3Q9UI47 895 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 FBXO3Q9UK99 471 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 ANGEL1Q9UNK9 670 aaKnown RBP12.05□□□□□ -0.48
CHFR-219ENST00000541341 MRVI1Q9Y6F6 885 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 PDE4DIPQ5VU43 2346 aa12.05□□□□□ -0.48
CHFR-219ENST00000541341 CLRN2A0PK11 232 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 GOLGA6L9A6NEM1 432 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 SLU7O95391 586 aaKnown RBP12.04□□□□□ -0.48
CHFR-219ENST00000541341 NF2P35240 595 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 NAA16Q6N069 864 aaPredicted RBP12.04□□□□□ -0.48
CHFR-219ENST00000541341 NOL8Q76FK4 1167 aaKnown RBP12.04□□□□□ -0.48
CHFR-219ENST00000541341 CCDC186Q7Z3E2 898 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 FILIP1Q7Z7B0 1213 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 CCDC83Q8IWF9 413 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 CEP57L1Q8IYX8 460 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 ZNF830Q96NB3 372 aaPredicted RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms