RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 GTF2A2P52657 109 aa18.26■□□□□ 0.51
UBE3B-212ENST00000540230 FAM43AQ8N2R8 423 aa18.26■□□□□ 0.51
UBE3B-212ENST00000540230 LCORLQ8N3X6 602 aa18.26■□□□□ 0.51
UBE3B-212ENST00000540230 CFHR5Q9BXR6 569 aa18.26■□□□□ 0.51
UBE3B-212ENST00000540230 IGHDP01880 384 aa18.25■□□□□ 0.51
UBE3B-212ENST00000540230 USP5P45974 858 aa18.25■□□□□ 0.51
UBE3B-212ENST00000540230 ANKRD45Q5TZF3 282 aa18.25■□□□□ 0.51
UBE3B-212ENST00000540230 TMED8Q6PL24 325 aaPredicted RBP18.25■□□□□ 0.51
UBE3B-212ENST00000540230 PI4K2BQ8TCG2 481 aa18.25■□□□□ 0.51
UBE3B-212ENST00000540230 ZNF296Q8WUU4 475 aaPredicted RBP18.25■□□□□ 0.51
UBE3B-212ENST00000540230 DHX36Q9H2U1 1008 aaKnown RBP18.25■□□□□ 0.51
UBE3B-212ENST00000540230 PI4KBQ9UBF8 816 aa18.25■□□□□ 0.51
UBE3B-212ENST00000540230 PTPRFP10586 1907 aa18.25■□□□□ 0.51
UBE3B-212ENST00000540230 GPR25O00155 361 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 ALDH1A1P00352 501 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 PTPRAP18433 802 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 AAMPQ13685 434 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 IFFO2Q5TF58 517 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 GCC1Q96CN9 775 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 ARMT1Q9H993 441 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 KCNH4Q9UQ05 1017 aa18.24■□□□□ 0.51
UBE3B-212ENST00000540230 CTNND1O60716 968 aaKnown RBP18.23■□□□□ 0.51
UBE3B-212ENST00000540230 EVX2Q03828 476 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 CRHR2Q13324 411 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 SNAPC2Q13487 334 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 MOGSQ13724 837 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 SHROOM1Q2M3G4 852 aaPredicted RBP18.23■□□□□ 0.51
UBE3B-212ENST00000540230 METTL16Q86W50 562 aaKnown RBP18.23■□□□□ 0.51
UBE3B-212ENST00000540230 CERS3Q8IU89 383 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 SDR42E1Q8WUS8 393 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 GPATCH3Q96I76 525 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 BTBD19C9JJ37 291 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 JAG1P78504 1218 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.23■□□□□ 0.51
UBE3B-212ENST00000540230 PICK1Q9NRD5 415 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 HERC5Q9UII4 1024 aaKnown RBP18.23■□□□□ 0.51
UBE3B-212ENST00000540230 ZHX2Q9Y6X8 837 aa18.23■□□□□ 0.51
UBE3B-212ENST00000540230 TTC41PQ6P2S7 1318 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 PRKAB2O43741 272 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 MBD4O95243 580 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 CETPP11597 493 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 MX1P20591 662 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 UBE3CQ15386 1083 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 SMC5Q8IY18 1101 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 KBTBD3Q8NAB2 608 aa18.22■□□□□ 0.51
UBE3B-212ENST00000540230 PUS7LQ9H0K6 701 aaKnown RBP18.22■□□□□ 0.51
UBE3B-212ENST00000540230 BAZ2AQ9UIF9 1905 aaKnown RBP18.21■□□□□ 0.51
UBE3B-212ENST00000540230 CAP2P40123 477 aa18.21■□□□□ 0.51
UBE3B-212ENST00000540230 OTUD7BQ6GQQ9 843 aa18.21■□□□□ 0.51
UBE3B-212ENST00000540230 CRNKL1Q9BZJ0 848 aaKnown RBP18.21■□□□□ 0.51
UBE3B-212ENST00000540230 MCOLN1Q9GZU1 580 aa18.21■□□□□ 0.51
UBE3B-212ENST00000540230 AFG3L2Q9Y4W6 797 aa18.21■□□□□ 0.51
UBE3B-212ENST00000540230 HLA-DOAP06340 250 aa18.2■□□□□ 0.5
UBE3B-212ENST00000540230 PLCD1P51178 756 aa18.2■□□□□ 0.5
UBE3B-212ENST00000540230 DGKZQ13574 1117 aa18.2■□□□□ 0.5
UBE3B-212ENST00000540230 TAF1CQ15572 869 aaPredicted RBP18.2■□□□□ 0.5
UBE3B-212ENST00000540230 NOM1Q5C9Z4 860 aaKnown RBP18.2■□□□□ 0.5
UBE3B-212ENST00000540230 B4GALNT3Q6L9W6 998 aa18.2■□□□□ 0.5
UBE3B-212ENST00000540230 FOXP4Q8IVH2 680 aaPredicted RBP18.2■□□□□ 0.5
UBE3B-212ENST00000540230 CRACR2BQ8N4Y2 399 aaPredicted RBP18.2■□□□□ 0.5
UBE3B-212ENST00000540230 LNPKQ9C0E8 428 aa18.2■□□□□ 0.5
UBE3B-212ENST00000540230 GLRX3O76003 335 aaKnown RBP18.19■□□□□ 0.5
UBE3B-212ENST00000540230 GDF11O95390 407 aa18.19■□□□□ 0.5
UBE3B-212ENST00000540230 RWDD1Q9H446 243 aaPredicted RBP18.19■□□□□ 0.5
UBE3B-212ENST00000540230 DCP1AQ9NPI6 582 aaPredicted RBP18.19■□□□□ 0.5
UBE3B-212ENST00000540230 HTTP42858 3142 aa18.19■□□□□ 0.5
UBE3B-212ENST00000540230 A0A0G2JLL6 359 aaPredicted RBP18.18■□□□□ 0.5
UBE3B-212ENST00000540230 TRIM75PA6NK02 468 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 SMIM22K7EJ46 135 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 CXCL11O14625 94 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 ERC2O15083 957 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 FKTNO75072 461 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 CAPN15O75808 1086 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 CYP2D6P10635 497 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 CAP1Q01518 475 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 GPAT2Q6NUI2 795 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 PRRT2Q7Z6L0 340 aaPredicted RBP18.18■□□□□ 0.5
UBE3B-212ENST00000540230 OSBP2Q969R2 916 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 ZSCAN25Q6NSZ9 544 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 MCM9Q9NXL9 1143 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 ZBTB47Q9UFB7 747 aaPredicted RBP18.18■□□□□ 0.5
UBE3B-212ENST00000540230 SERPINB13Q9UIV8 391 aa18.18■□□□□ 0.5
UBE3B-212ENST00000540230 PDE1AP54750 535 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 CTU1Q7Z7A3 348 aaKnown RBP18.17■□□□□ 0.5
UBE3B-212ENST00000540230 ANKRD23Q86SG2 305 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 ABHD8Q96I13 439 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 TRIM34Q9BYJ4 488 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 EHD4Q9H223 541 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 STAP2Q9UGK3 403 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 ZSWIM8A7E2V4 1837 aa18.17■□□□□ 0.5
UBE3B-212ENST00000540230 LOC285556D6RIA3 1793 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 CENPFP49454 3210 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 PDHXO00330 501 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 RNF113AO15541 343 aaKnown RBP18.16■□□□□ 0.5
UBE3B-212ENST00000540230 POLR3DP05423 398 aaPredicted RBP18.16■□□□□ 0.5
UBE3B-212ENST00000540230 GABPAQ06546 454 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 SPP2Q13103 211 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 TATDN1Q6P1N9 297 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 TTC6Q86TZ1 520 aa18.16■□□□□ 0.5
UBE3B-212ENST00000540230 APPBP2Q92624 585 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms