RNA–Protein interactions for RNA: ENST00000538333.3

LIMK1-208, Transcript of LIM domain kinase 1, humanhuman

TSL 2 BASIC

Gene LIMK1, Length 2,170 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-208ENST00000538333 TNKSO95271 1327 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 TPM3P06753 285 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 ZNF75DP51815 510 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 MECOMQ03112 1051 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 MEX3CQ5U5Q3 659 aaKnown RBP16.23■□□□□ 0.19
LIMK1-208ENST00000538333 CRACR2BQ8N4Y2 399 aaPredicted RBP16.23■□□□□ 0.19
LIMK1-208ENST00000538333 FANCBQ8NB91 859 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 SPC24Q8NBT2 197 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 UBAC1Q9BSL1 405 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 ANO10Q9NW15 660 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 A0A087WWV3 80 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 CYP2D7A0A087X1C5 515 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 CCDC196A0A1B0GTZ2 297 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 ZNF202O95125 648 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 MMP1P03956 469 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 TERF1P54274 439 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 SARM1Q6SZW1 724 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 ERCC4Q92889 916 aaPredicted RBP16.23■□□□□ 0.19
LIMK1-208ENST00000538333 SDF4Q9BRK5 362 aa16.23■□□□□ 0.19
LIMK1-208ENST00000538333 GOLGA6L6A8MZA4 724 aa16.22■□□□□ 0.19
LIMK1-208ENST00000538333 PFKFB1P16118 471 aa16.22■□□□□ 0.19
LIMK1-208ENST00000538333 MARCKSP29966 332 aaPredicted RBP16.22■□□□□ 0.19
LIMK1-208ENST00000538333 CTR9Q6PD62 1173 aa16.22■□□□□ 0.19
LIMK1-208ENST00000538333 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.22■□□□□ 0.19
LIMK1-208ENST00000538333 TXNRD3Q86VQ6 643 aa16.22■□□□□ 0.19
LIMK1-208ENST00000538333 DHX40Q8IX18 779 aaKnown RBP16.22■□□□□ 0.19
LIMK1-208ENST00000538333 TRIM22Q8IYM9 498 aa16.22■□□□□ 0.19
LIMK1-208ENST00000538333 ENAHQ8N8S7 591 aaPredicted RBP16.22■□□□□ 0.19
LIMK1-208ENST00000538333 KIAA1468Q9P260 1216 aa16.22■□□□□ 0.19
LIMK1-208ENST00000538333 FAM237AA0A1B0GTK4 181 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 DEXIO95424 95 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 PCP11498 1178 aaKnown RBP16.21■□□□□ 0.19
LIMK1-208ENST00000538333 PRDX5P30044 214 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 GNL2Q13823 731 aaKnown RBP16.21■□□□□ 0.19
LIMK1-208ENST00000538333 GJD4Q96KN9 370 aaPredicted RBP16.21■□□□□ 0.19
LIMK1-208ENST00000538333 TRIM5Q9C035 493 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.21■□□□□ 0.19
LIMK1-208ENST00000538333 HPSEQ9Y251 543 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.21■□□□□ 0.19
LIMK1-208ENST00000538333 PPP2R5BQ15173 497 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 NOSTRINQ8IVI9 506 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 ZSCAN10Q96SZ4 725 aaPredicted RBP16.21■□□□□ 0.19
LIMK1-208ENST00000538333 SPTLC3Q9NUV7 552 aa16.21■□□□□ 0.19
LIMK1-208ENST00000538333 BTBD18B2RXH4 712 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 RFC4P35249 363 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 NFIXQ14938 502 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 TMED8Q6PL24 325 aaPredicted RBP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 SHC4Q6S5L8 630 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 CMTR1Q8N1G2 835 aaKnown RBP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 JMYQ8N9B5 988 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 NUP133Q8WUM0 1156 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 UBR3Q6ZT12 1888 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 USP17L12C9JPN9 530 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 USP17L21D6R901 530 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 GOLGA6L19H0YKK7 550 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 NOLC1Q14978 699 aaKnown RBP eCLIP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 TRAPPC3LQ5T215 181 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 DIS3L2Q8IYB7 885 aaKnown RBP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 CEP57L1Q8IYX8 460 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 KIAA1524Q8TCG1 905 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 TIGD1Q96MW7 591 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 FOXP1Q9H334 677 aaPredicted RBP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 DCP1AQ9NPI6 582 aaPredicted RBP16.2■□□□□ 0.18
LIMK1-208ENST00000538333 TAOK2Q9UL54 1235 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 KCNJ14Q9UNX9 436 aa16.2■□□□□ 0.18
LIMK1-208ENST00000538333 ONECUT3O60422 494 aaPredicted RBP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 CDC25BP30305 580 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 TOB1P50616 345 aaPredicted RBP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 FUT2Q10981 343 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 CHAF1AQ13111 956 aaPredicted RBP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 FAM196AQ6ZSG2 479 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 CCDC82Q8N4S0 544 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 RNF26Q9BY78 433 aaPredicted RBP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 AATFQ9NY61 560 aaKnown RBP eCLIP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 R3HCC1Q9Y3T6 440 aaKnown RBP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 PRDM1O75626 825 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 TPM2P07951 284 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 PTGS1P23219 599 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 EVX2Q03828 476 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 RESP18Q5W5W9 173 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 SLC51AQ86UW1 340 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 C17orf53Q8N3J3 647 aaPredicted RBP16.19■□□□□ 0.18
LIMK1-208ENST00000538333 LRRC4BQ9NT99 713 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 PYCARDQ9ULZ3 195 aa16.19■□□□□ 0.18
LIMK1-208ENST00000538333 ORC4O43929 436 aa16.18■□□□□ 0.18
LIMK1-208ENST00000538333 SLC3A2P08195 630 aaKnown RBP16.18■□□□□ 0.18
LIMK1-208ENST00000538333 TROAPQ12815 778 aa16.18■□□□□ 0.18
LIMK1-208ENST00000538333 GRAPQ13588 217 aa16.18■□□□□ 0.18
LIMK1-208ENST00000538333 SAFBQ15424 915 aaKnown RBP eCLIP16.18■□□□□ 0.18
LIMK1-208ENST00000538333 GRAPLQ8TC17 118 aaPredicted RBP16.18■□□□□ 0.18
LIMK1-208ENST00000538333 SHISA4Q96DD7 197 aa16.18■□□□□ 0.18
LIMK1-208ENST00000538333 CRNKL1Q9BZJ0 848 aaKnown RBP16.18■□□□□ 0.18
LIMK1-208ENST00000538333 ATP8A2Q9NTI2 1148 aa16.18■□□□□ 0.18
LIMK1-208ENST00000538333 CUTAO60888 179 aa16.17■□□□□ 0.18
LIMK1-208ENST00000538333 SYKP43405 635 aa16.17■□□□□ 0.18
LIMK1-208ENST00000538333 RBM6P78332 1123 aaKnown RBP16.17■□□□□ 0.18
LIMK1-208ENST00000538333 DPCR1Q3MIW9 517 aa16.17■□□□□ 0.18
LIMK1-208ENST00000538333 IFIT1BQ5T764 474 aaKnown RBP16.17■□□□□ 0.18
LIMK1-208ENST00000538333 CCDC186Q7Z3E2 898 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms