RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 PLS1Q14651 629 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 AKNAD1Q5T1N1 836 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 C8orf74Q6P047 294 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 SMAP1Q8IYB5 467 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 ARHGAP24Q8N264 748 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 RBM28Q9NW13 759 aaKnown RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 TTF2Q9UNY4 1162 aaKnown RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 AFAP1L1Q8TED9 768 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 CPSF2Q9P2I0 782 aaKnown RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 A0A1B0GUL7 405 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 CEP85LQ5SZL2 805 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 NOX5Q96PH1 765 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 PLEKHF1Q96S99 279 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 NOC4LQ9BVI4 516 aaKnown RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 ANKRD36BQ8N2N9 1353 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 HMGB1P1B2RPK0 211 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 RILPL1Q5EBL4 403 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 LIN9Q5TKA1 542 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 PPP1R21Q6ZMI0 780 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 RUFY4Q6ZNE9 571 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 CEP120Q8N960 986 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 EPSTI1Q96J88 318 aa11.89□□□□□ -0.51
CLIP1-209ENST00000537178 NAPGQ99747 312 aaPredicted RBP11.89□□□□□ -0.51
CLIP1-209ENST00000537178 RAB3IPQ96QF0 476 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-209ENST00000537178 NYXQ9GZU5 481 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 AK2P54819 239 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 TTC6Q86TZ1 520 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 POTEDQ86YR6 584 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 STK10O94804 968 aaKnown RBP11.88□□□□□ -0.51
CLIP1-209ENST00000537178 HPDP32754 393 aaPredicted RBP11.88□□□□□ -0.51
CLIP1-209ENST00000537178 FAM160A1Q05DH4 1040 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 APOBRQ0VD83 1088 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 TSNAXIP1Q2TAA8 658 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 SH2D4AQ9H788 454 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 KIF20BQ96Q89 1820 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 VGLL3A8MV65 326 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 KRT5P13647 590 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 SMTNP53814 917 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 CREB3L3Q68CJ9 461 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 CADPS2Q86UW7 1296 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 UBL4BQ8N7F7 174 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 ZCRB1Q8TBF4 217 aaKnown RBP11.88□□□□□ -0.51
CLIP1-209ENST00000537178 MCUR1Q96AQ8 359 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 VCXQ9H320 206 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 WDR70Q9NW82 654 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 USH1CQ9Y6N9 552 aa11.88□□□□□ -0.51
CLIP1-209ENST00000537178 IGSF3O75054 1194 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 GKAP1Q5VSY0 366 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-209ENST00000537178 VSIG1Q86XK7 387 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 SMC5Q8IY18 1101 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 PRPF31Q8WWY3 499 aaKnown RBP11.87□□□□□ -0.51
CLIP1-209ENST00000537178 NIP7Q9Y221 180 aaKnown RBP eCLIP11.87□□□□□ -0.51
CLIP1-209ENST00000537178 LGSNQ5TDP6 509 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-209ENST00000537178 IGSF22Q8N9C0 903 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 VEZTQ9HBM0 779 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 ITIH3Q06033 890 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 RAB3GAP1Q15042 981 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 TPTE2Q6XPS3 522 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 IFT20Q8IY31 132 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 PPP1R12CQ9BZL4 782 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 ZBTB21Q9ULJ3 1066 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 UTP11Q9Y3A2 253 aaKnown RBP11.87□□□□□ -0.51
CLIP1-209ENST00000537178 REREQ9P2R6 1566 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 CNNM4Q6P4Q7 775 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 CCDC62Q6P9F0 684 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 PPIP5K1Q6PFW1 1433 aa11.87□□□□□ -0.51
CLIP1-209ENST00000537178 CETN3O15182 167 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 IRX3P78415 501 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 MAP7Q14244 749 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 SEPT14Q6ZU15 432 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 TAOK1Q7L7X3 1001 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 VWA3AA6NCI4 1184 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 PARP1P09874 1014 aaKnown RBP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 INPP5BP32019 993 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 GBP1P32455 592 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 IRX5P78411 483 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 UTP14CQ5TAP6 766 aaKnown RBP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 SLC9C1Q4G0N8 1177 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 HAUS3Q68CZ6 603 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 CYP26C1Q6V0L0 522 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 GBP7Q8N8V2 638 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 GLT8D2Q9H1C3 349 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 DKC1O60832 514 aaKnown RBP eCLIP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 LDHBP07195 334 aaKnown RBP11.86□□□□□ -0.51
CLIP1-209ENST00000537178 CLEC17AQ6ZS10 378 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 GTF3C6Q969F1 213 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 RNF34Q969K3 372 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 EYA3Q99504 573 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 ZKSCAN3Q9BRR0 538 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 ANKRD2Q9GZV1 360 aa11.86□□□□□ -0.51
CLIP1-209ENST00000537178 ATP6V1AP38606 617 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 PSMD6Q15008 389 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 PLIN2Q99541 437 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 NUP58Q9BVL2 599 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 EXOC7Q9UPT5 735 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 PNPLA6Q8IY17 1366 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 GOLGA6CA6NDK9 693 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 GOLGA6DP0CG33 693 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 U2AF2P26368 475 aaKnown RBP eCLIP11.85□□□□□ -0.511e-6■■■■□ 26
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms