RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 TBC1D2Q9BYX2 928 aa17.05■□□□□ 0.32
SYNE1-235ENST00000537033 AATFQ9NY61 560 aaKnown RBP eCLIP17.05■□□□□ 0.32
SYNE1-235ENST00000537033 HERC5Q9UII4 1024 aaKnown RBP17.05■□□□□ 0.32
SYNE1-235ENST00000537033 NOP58Q9Y2X3 529 aaKnown RBP17.05■□□□□ 0.32
SYNE1-235ENST00000537033 MYO5AQ9Y4I1 1855 aaKnown RBP17.05■□□□□ 0.32
SYNE1-235ENST00000537033 LOC285556D6RIA3 1793 aa17.05■□□□□ 0.32
SYNE1-235ENST00000537033 FAM196BA6NMK8 535 aa17.04■□□□□ 0.32
SYNE1-235ENST00000537033 ZBTB7BO15156 539 aaPredicted RBP17.04■□□□□ 0.32
SYNE1-235ENST00000537033 SLURP2P0DP57 97 aa17.04■□□□□ 0.32
SYNE1-235ENST00000537033 BCRP11274 1271 aa17.04■□□□□ 0.32
SYNE1-235ENST00000537033 RLBP1P12271 317 aa17.04■□□□□ 0.32
SYNE1-235ENST00000537033 OSBPP22059 807 aa17.04■□□□□ 0.32
SYNE1-235ENST00000537033 SH3RF3Q8TEJ3 882 aaPredicted RBP17.04■□□□□ 0.32
SYNE1-235ENST00000537033 TRIM34Q9BYJ4 488 aa17.04■□□□□ 0.32
SYNE1-235ENST00000537033 DHX36Q9H2U1 1008 aaKnown RBP17.04■□□□□ 0.32
SYNE1-235ENST00000537033 MS4A1P11836 297 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 CTGFP29279 349 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 ERC1Q8IUD2 1116 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 GCC1Q96CN9 775 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.03■□□□□ 0.32
SYNE1-235ENST00000537033 PI4KBQ9UBF8 816 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 PNMA3Q9UL41 463 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 AGTPBP1Q9UPW5 1226 aa17.03■□□□□ 0.32
SYNE1-235ENST00000537033 CYP2E1P05181 493 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-235ENST00000537033 GRK4P32298 578 aa17.02■□□□□ 0.32
SYNE1-235ENST00000537033 CCDC84Q86UT8 332 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-235ENST00000537033 CRACR2BQ8N4Y2 399 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-235ENST00000537033 PROCA1Q8NCQ7 364 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-235ENST00000537033 ZNF280CQ8ND82 737 aa17.02■□□□□ 0.32
SYNE1-235ENST00000537033 AS3MTQ9HBK9 375 aa17.02■□□□□ 0.32
SYNE1-235ENST00000537033 BIN2Q9UBW5 565 aaPredicted RBP17.02■□□□□ 0.32
SYNE1-235ENST00000537033 DBNLQ9UJU6 430 aaKnown RBP17.02■□□□□ 0.32
SYNE1-235ENST00000537033 SIPA1L1O43166 1804 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 CAP2P40123 477 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 ZAP70P43403 619 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 PPP4CP60510 307 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 PRKCZQ05513 592 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 PABPC4Q13310 644 aaKnown RBP eCLIP17.01■□□□□ 0.31
SYNE1-235ENST00000537033 CEP85Q6P2H3 762 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 TGFBRAP1Q8WUH2 860 aa17.01■□□□□ 0.31
SYNE1-235ENST00000537033 CCDC8Q9H0W5 538 aaPredicted RBP17.01■□□□□ 0.31
SYNE1-235ENST00000537033 TLR7Q9NYK1 1049 aaKnown RBP17.01■□□□□ 0.31
SYNE1-235ENST00000537033 FLT1P17948 1338 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 USP17L5A8MUK1 530 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 IDH1O75874 414 aaKnown RBP17■□□□□ 0.31
SYNE1-235ENST00000537033 UBXN2AP68543 259 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 SPP2Q13103 211 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 HSP90AB4PQ58FF6 505 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 CERS3Q8IU89 383 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 MAPKAPK5Q8IW41 473 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 SLAIN1Q8ND83 568 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 PANK1Q8TE04 598 aa17■□□□□ 0.31
SYNE1-235ENST00000537033 TNPO2O14787 897 aaKnown RBP16.99■□□□□ 0.31
SYNE1-235ENST00000537033 HLA-DOAP06340 250 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 ASNSP08243 561 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 CYP7A1P22680 504 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 HMGCS2P54868 508 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 TREML2Q5T2D2 321 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 ADGRA1Q86SQ6 560 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 AACSQ86V21 672 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 NKX2-3Q8TAU0 364 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 EAF2Q96CJ1 260 aaPredicted RBP16.99■□□□□ 0.31
SYNE1-235ENST00000537033 PIH1D3Q9NQM4 214 aaKnown RBP16.99■□□□□ 0.31
SYNE1-235ENST00000537033 EXOC6BQ9Y2D4 811 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 MYH1P12882 1939 aa16.99■□□□□ 0.31
SYNE1-235ENST00000537033 MAP3K12Q12852 859 aa16.98■□□□□ 0.31
SYNE1-235ENST00000537033 FOXP4Q8IVH2 680 aaPredicted RBP16.98■□□□□ 0.31
SYNE1-235ENST00000537033 CCL5P13501 91 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 GCLCP48506 637 aaPredicted RBP16.97■□□□□ 0.31
SYNE1-235ENST00000537033 MTFR1Q15390 333 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 FAM110CQ1W6H9 321 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 TMED8Q6PL24 325 aaPredicted RBP16.97■□□□□ 0.31
SYNE1-235ENST00000537033 ANKRD13CQ8N6S4 541 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 MAGEB6Q8N7X4 407 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 COA7Q96BR5 231 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 GINM1Q9NU53 330 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 TMOD4Q9NZQ9 345 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 PALD1Q9ULE6 856 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 BRCA2P51587 3418 aa16.97■□□□□ 0.31
SYNE1-235ENST00000537033 ADCY3O60266 1144 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 HMMRO75330 724 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 USP5P45974 858 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 FLT3LGP49771 235 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 RRP1BQ14684 758 aaKnown RBP16.96■□□□□ 0.31
SYNE1-235ENST00000537033 MIGA1Q8NAN2 632 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 RNF208Q9H0X6 261 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 SAP30BPQ9UHR5 308 aaKnown RBP16.96■□□□□ 0.31
SYNE1-235ENST00000537033 GABRQQ9UN88 632 aa16.96■□□□□ 0.31
SYNE1-235ENST00000537033 DYNLL1P63167 89 aaKnown RBP16.95■□□□□ 0.3
SYNE1-235ENST00000537033 IRX3P78415 501 aaPredicted RBP16.95■□□□□ 0.3
SYNE1-235ENST00000537033 MTMR2Q13614 643 aa16.95■□□□□ 0.3
SYNE1-235ENST00000537033 SH3D19Q5HYK7 790 aa16.95■□□□□ 0.3
SYNE1-235ENST00000537033 WDR18Q9BV38 432 aa16.95■□□□□ 0.3
SYNE1-235ENST00000537033 CHMP4BQ9H444 224 aaKnown RBP16.95■□□□□ 0.3
SYNE1-235ENST00000537033 TAOK2Q9UL54 1235 aa16.95■□□□□ 0.3
SYNE1-235ENST00000537033 DDX19BQ9UMR2 479 aa16.95■□□□□ 0.3
SYNE1-235ENST00000537033 MKI67P46013 3256 aaKnown RBP16.94■□□□□ 0.3
SYNE1-235ENST00000537033 GJB1P08034 283 aa16.94■□□□□ 0.3
SYNE1-235ENST00000537033 BACE1P56817 501 aa16.94■□□□□ 0.3
SYNE1-235ENST00000537033 IRF5Q13568 498 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms