RNA–Protein interactions for RNA: ENST00000533299.2

LMO7-223, Transcript of LIM domain 7, human

TSL 3

Gene LMO7, Length 1,845 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMO7-223	ENST00000533299	CCDC84	Q86UT8	332 aa	Predicted RBP	5.45	□□□□□ -1.54
LMO7-223	ENST00000533299	UBASH3B	Q8TF42	649 aa		5.45	□□□□□ -1.54
LMO7-223	ENST00000533299	OSBPL1A	Q9BXW6	950 aa		5.45	□□□□□ -1.54
LMO7-223	ENST00000533299	ZC3H12C	Q9C0D7	883 aa	Known RBP	5.45	□□□□□ -1.54
LMO7-223	ENST00000533299	SART1	O43290	800 aa	Known RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	RANGAP1	P46060	587 aa	Predicted RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	RAP1GAP	P47736	663 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	HDLBP	Q00341	1268 aa	Known RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	LMNB2	Q03252	620 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	KIAA1211	Q6ZU35	1233 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	PDZD3	Q86UT5	571 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	NT5DC4	Q86YG4	428 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	ZNF654	Q8IZM8	581 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	PHC3	Q8NDX5	983 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	MFSD14A	Q96MC6	490 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	KCNF1	Q9H3M0	494 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	KBTBD4	Q9NVX7	518 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	LMCD1	Q9NZU5	365 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	MINDY4B	A8MYZ0	360 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	ERCC5	P28715	1186 aa	Predicted RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	SNAP47	Q5SQN1	464 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	ATG4D	Q86TL0	474 aa	Predicted RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	C12orf50	Q8NA57	414 aa	Predicted RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	SMG8	Q8ND04	991 aa	Known RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	TMPRSS13	Q9BYE2	586 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	CCDC86	Q9H6F5	360 aa	Known RBP	5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	SUGCT	Q9HAC7	445 aa		5.44	□□□□□ -1.54
LMO7-223	ENST00000533299	AOC2	O75106	756 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	WISP1	O95388	367 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	BPNT1	O95861	308 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	BMP3	P12645	472 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	EIF4A3	P38919	411 aa	Known RBP	5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	CAMK2G	Q13555	558 aa	Predicted RBP	5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	LRRC56	Q8IYG6	542 aa	Predicted RBP	5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	GRIN3A	Q8TCU5	1115 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	STK35	Q8TDR2	534 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	FAM168A	Q92567	244 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	METTL22	Q9BUU2	404 aa	Predicted RBP	5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	TGIF2	Q9GZN2	237 aa		5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	SUPT16H	Q9Y5B9	1047 aa	Known RBP	5.43	□□□□□ -1.54
LMO7-223	ENST00000533299	ROBO2	Q9HCK4	1378 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	LIG1	P18858	919 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	TFE3	P19532	575 aa	Predicted RBP	5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	KIF4B	Q2VIQ3	1234 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	AKAP4	Q5JQC9	854 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	METTL16	Q86W50	562 aa	Known RBP	5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	GPBAR1	Q8TDU6	330 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	YIPF2	Q9BWQ6	316 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	CCSER2	Q9H7U1	834 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	DDX41	Q9UJV9	622 aa	Known RBP	5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	PCDHA4	Q9UN74	947 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	TLR6	Q9Y2C9	796 aa		5.42	□□□□□ -1.54
LMO7-223	ENST00000533299	GAS2	O43903	313 aa	Known RBP	5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	ECEL1	O95672	775 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	PF4	P02776	101 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	F13B	P05160	661 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	ZSCAN22	P10073	491 aa	Predicted RBP	5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	GNL2	Q13823	731 aa	Known RBP	5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	C9orf131	Q5VYM1	1079 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	HDX	Q7Z353	690 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	KIAA0825	Q8IV33	1275 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	JARID2	Q92833	1246 aa	Predicted RBP	5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	ELMO3	Q96BJ8	720 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	RHOV	Q96L33	236 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	SPON2	Q9BUD6	331 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	WDR18	Q9BV38	432 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	COPRS	Q9NQ92	184 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	PICK1	Q9NRD5	415 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	SNCAIP	Q9Y6H5	919 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	CTSB	P07858	339 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	ID3	Q02535	119 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	SOX4	Q06945	474 aa	Predicted RBP	5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	GOLM1	Q8NBJ4	401 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	SPATA32	Q96LK8	384 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	PPP1R16B	Q96T49	567 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	ATXN3L	Q9H3M9	355 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	CACNA2D2	Q9NY47	1150 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	AP4E1	Q9UPM8	1137 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299	PCDHB5	Q9Y5E4	795 aa		5.41	□□□□□ -1.54
LMO7-223	ENST00000533299		F6X3S4	739 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	ZNF862	O60290	1169 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	DLGAP3	O95886	979 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	USP11	P51784	963 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	RPL6	Q02878	288 aa	Known RBP	5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	ZNF394	Q53GI3	561 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	ZNF296	Q8WUU4	475 aa	Predicted RBP	5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	GATAD2B	Q8WXI9	593 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	IGSF5	Q9NSI5	407 aa		5.4	□□□□□ -1.54
LMO7-223	ENST00000533299	TSPAN15	O95858	294 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	ADH5	P11766	374 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	CTSW	P56202	376 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	ERVK-24	P63145	666 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	FAM160A1	Q05DH4	1040 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	SEPT6	Q14141	434 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	DYM	Q7RTS9	669 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	PIDD1	Q9HB75	910 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	PCDHGB7	Q9Y5F8	929 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	CYP26A1	O43174	497 aa		5.39	□□□□□ -1.55
LMO7-223	ENST00000533299	MPP2	Q14168	576 aa		5.39	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms