RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 MEGF10Q96KG7 1140 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 RHOVQ96L33 236 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 WDR18Q9BV38 432 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 TMPRSS13Q9BYE2 586 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 AKTIPQ9H8T0 292 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 CEP83Q9Y592 693 aa6.77□□□□□ -1.33
CD44-236ENST00000533222 C9orf172C9J069 976 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 TULP2O00295 520 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 PF4P02776 101 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 DRD2P14416 443 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 TCF3P15923 654 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 GBP2P32456 591 aaPredicted RBP6.76□□□□□ -1.33
CD44-236ENST00000533222 LMOD3Q0VAK6 560 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 MYBPC2Q14324 1141 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 AKAP4Q5JQC9 854 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 ALYREFQ86V81 257 aaKnown RBP6.76□□□□□ -1.33
CD44-236ENST00000533222 FAM177A1Q8N128 213 aaPredicted RBP6.76□□□□□ -1.33
CD44-236ENST00000533222 DCAF11Q8TEB1 546 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 TMEM74Q96NL1 305 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 NACC1Q96RE7 527 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 RNF208Q9H0X6 261 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 METTL5Q9NRN9 209 aaKnown RBP6.76□□□□□ -1.33
CD44-236ENST00000533222 CACNA2D2Q9NY47 1150 aa6.76□□□□□ -1.33
CD44-236ENST00000533222 AOC2O75106 756 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 OFD1O75665 1012 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 GLB1P16278 677 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 PREPP48147 710 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 RACK1P63244 317 aaKnown RBP6.75□□□□□ -1.33
CD44-236ENST00000533222 NRG1Q02297 640 aaPredicted RBP6.75□□□□□ -1.33
CD44-236ENST00000533222 RAD51AP2Q09MP3 1159 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 BNC2Q6ZN30 1099 aaPredicted RBP6.75□□□□□ -1.33
CD44-236ENST00000533222 Q6ZS46 218 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 USP48Q86UV5 1035 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 TXNRD3Q86VQ6 643 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 NT5DC4Q86YG4 428 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 TMEM130Q8N3G9 435 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 TMEM151AQ8N4L1 468 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 MSL3Q8N5Y2 521 aaKnown RBP6.75□□□□□ -1.33
CD44-236ENST00000533222 ITFG2Q969R8 447 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 UBL7Q96S82 380 aaPredicted RBP6.75□□□□□ -1.33
CD44-236ENST00000533222 MYCBPQ99417 103 aaPredicted RBP6.75□□□□□ -1.33
CD44-236ENST00000533222 RSRP1Q9BUV0 290 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 EMILIN2Q9BXX0 1053 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 ADAMTS1Q9UHI8 967 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 PPP1R9AQ9ULJ8 1098 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 KNSTRNQ9Y448 316 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 SAMM50Q9Y512 469 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 PCDHGC5Q9Y5F6 944 aa6.75□□□□□ -1.33
CD44-236ENST00000533222 TIAF1O95411 115 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 GARTP22102 1010 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 RPS26P62854 115 aaKnown RBP6.74□□□□□ -1.33
CD44-236ENST00000533222 NFKBIBQ15653 356 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 HS1BP3Q53T59 392 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 EXOSC6Q5RKV6 272 aaKnown RBP6.74□□□□□ -1.33
CD44-236ENST00000533222 NUTM2GQ5VZR2 741 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 ACSBG1Q96GR2 724 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 NCAPGQ9BPX3 1015 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 PAIP2Q9BPZ3 127 aaKnown RBP6.74□□□□□ -1.33
CD44-236ENST00000533222 CYP8B1Q9UNU6 501 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 AP4E1Q9UPM8 1137 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 KIF3AQ9Y496 699 aa6.74□□□□□ -1.33
CD44-236ENST00000533222 MEGF11A6BM72 1044 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 TMPRSS2O15393 492 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 TRIM37O94972 964 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 CCDC172P0C7W6 258 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 ADH5P11766 374 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 TRDNQ13061 729 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 CAMK2GQ13555 558 aaPredicted RBP6.73□□□□□ -1.33
CD44-236ENST00000533222 LRRC14Q15048 493 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 KIF4BQ2VIQ3 1234 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 UVSSAQ2YD98 709 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 SPTY2D1Q68D10 685 aaPredicted RBP6.73□□□□□ -1.33
CD44-236ENST00000533222 RELL1Q8IUW5 271 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 SMG8Q8ND04 991 aaKnown RBP6.73□□□□□ -1.33
CD44-236ENST00000533222 LSM14AQ8ND56 463 aaKnown RBP6.73□□□□□ -1.33
CD44-236ENST00000533222 FBXO27Q8NI29 283 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 JARID2Q92833 1246 aaPredicted RBP6.73□□□□□ -1.33
CD44-236ENST00000533222 KRT82Q9NSB4 513 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 PCDHA4Q9UN74 947 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 CSADQ9Y600 493 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 KIF16BQ96L93 1317 aa6.73□□□□□ -1.33
CD44-236ENST00000533222 FSD2A1L4K1 749 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 DCDC2CA8MYV0 355 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 ANP32CO43423 234 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 ZNF500O60304 480 aaPredicted RBP6.72□□□□□ -1.33
CD44-236ENST00000533222 F13A1P00488 732 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 LMNB2Q03252 620 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 INPP5AQ14642 412 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 CDC37Q16543 378 aaPredicted RBP6.72□□□□□ -1.33
CD44-236ENST00000533222 FDX2Q6P4F2 183 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 FBXL19Q6PCT2 694 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 LRFN4Q6PJG9 635 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 C12orf50Q8NA57 414 aaPredicted RBP6.72□□□□□ -1.33
CD44-236ENST00000533222 SSBP4Q9BWG4 385 aaPredicted RBP6.72□□□□□ -1.33
CD44-236ENST00000533222 MIR1-1HGQ9H1L0 117 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 MED4Q9NPJ6 270 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 RAD18Q9NS91 495 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 DDX41Q9UJV9 622 aaKnown RBP6.72□□□□□ -1.33
CD44-236ENST00000533222 MRVI1Q9Y6F6 885 aa6.72□□□□□ -1.33
CD44-236ENST00000533222 ZRANB2O95218 330 aaKnown RBP eCLIP6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms