RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 STIM1Q13586 685 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 TXNRD1Q16881 649 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 VAT1LQ9HCJ6 419 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 A0A1B0GVL5 298 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 ADALQ6DHV7 355 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 DNAJC25Q9H1X3 360 aa12.76□□□□□ -0.37
TRIM3-211ENST00000532542 BIN1O00499 593 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 DDAH1O94760 285 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 FAM47AQ5JRC9 791 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 SAMD1Q6SPF0 538 aaPredicted RBP12.75□□□□□ -0.37
TRIM3-211ENST00000532542 HEATR3Q7Z4Q2 680 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 HOMER1Q86YM7 354 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 IFNAR1P17181 557 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 LIG1P18858 919 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 PDILTQ8N807 584 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 SMARCE1Q969G3 411 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 CABP5Q9NP86 173 aa12.75□□□□□ -0.37
TRIM3-211ENST00000532542 MARF1Q9Y4F3 1742 aaKnown RBP12.75□□□□□ -0.37
TRIM3-211ENST00000532542 BTDP43251 543 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 RTEL1Q9NZ71 1219 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 HDAC9Q9UKV0 1011 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 CUTAO60888 179 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 OGFOD1Q8N543 542 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 VGLL2Q8N8G2 317 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 RRP36Q96EU6 259 aaKnown RBP12.74□□□□□ -0.37
TRIM3-211ENST00000532542 RCOR1Q9UKL0 485 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 PARP1P09874 1014 aaKnown RBP12.74□□□□□ -0.37
TRIM3-211ENST00000532542 NPR1P16066 1061 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 PRDX5P30044 214 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 FILIP1Q7Z7B0 1213 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 SUPT20HQ8NEM7 779 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 LZTS2Q9BRK4 669 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 RAB34Q9BZG1 259 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 NEDD4P46934 1319 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 PHLPP1O60346 1717 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 NAPAP54920 295 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 CYB5R4Q7L1T6 521 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 NOSTRINQ8IVI9 506 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 C6orf50Q9HD87 102 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 CLIP2Q9UDT6 1046 aa12.74□□□□□ -0.37
TRIM3-211ENST00000532542 FMNL1O95466 1100 aaPredicted RBP12.73□□□□□ -0.37
TRIM3-211ENST00000532542 PRR5LQ6MZQ0 368 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 RNF26Q9BY78 433 aaPredicted RBP12.73□□□□□ -0.37
TRIM3-211ENST00000532542 TCP11L1Q9NUJ3 509 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 KCNJ14Q9UNX9 436 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 TTF2Q9UNY4 1162 aaKnown RBP12.73□□□□□ -0.37
TRIM3-211ENST00000532542 TULP1O00294 542 aaPredicted RBP12.73□□□□□ -0.37
TRIM3-211ENST00000532542 GNA11P29992 359 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 MSL1Q68DK7 614 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 FBXO33Q7Z6M2 555 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 C2CD5Q86YS7 1000 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 CNKSR1Q969H4 720 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 UBA7P41226 1012 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 RCAN1P53805 252 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 SGMS1Q86VZ5 419 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 TEKT1Q969V4 418 aa12.73□□□□□ -0.37
TRIM3-211ENST00000532542 STRCP1A6NGW2 1772 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 POLR3EQ9NVU0 708 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 AHDC1Q5TGY3 1603 aaPredicted RBP12.72□□□□□ -0.37
TRIM3-211ENST00000532542 NR1I2O75469 434 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 TMEM266Q2M3C6 531 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 CFAP100Q494V2 611 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 PKD1L3Q7Z443 1732 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 A0A1W2PQ27 194 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 A0A1W2PQ64 194 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 A0A1W2PQD8 194 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 KIF23Q02241 960 aaPredicted RBP12.72□□□□□ -0.37
TRIM3-211ENST00000532542 AFDNP55196 1824 aaKnown RBP12.72□□□□□ -0.37
TRIM3-211ENST00000532542 MMP10P09238 476 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 PNMA1Q8ND90 353 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 COA1Q9GZY4 146 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 LY9Q9HBG7 655 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 CD209Q9NNX6 404 aa12.72□□□□□ -0.37
TRIM3-211ENST00000532542 R3HCC1Q9Y3T6 440 aaKnown RBP12.72□□□□□ -0.37
TRIM3-211ENST00000532542 COL18A1P39060 1754 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 AK9Q5TCS8 1911 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 BAG6P46379 1132 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 NSUN4Q96CB9 384 aaKnown RBP12.71□□□□□ -0.37
TRIM3-211ENST00000532542 VPS54Q9P1Q0 977 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 MAGEC2Q9UBF1 373 aaPredicted RBP12.71□□□□□ -0.37
TRIM3-211ENST00000532542 PCDHA7Q9UN72 937 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 MYO1BO43795 1136 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 ZNF202O95125 648 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 TCEAL9Q9UHQ7 104 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 KCNH3Q9ULD8 1083 aa12.71□□□□□ -0.37
TRIM3-211ENST00000532542 RIC1Q4ADV7 1423 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 CYP2D7A0A087X1C5 515 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 CCP110O43303 1012 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 NEMFO60524 1076 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 DIXDC1Q155Q3 683 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 LUZP1Q86V48 1076 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 CMTR1Q8N1G2 835 aaKnown RBP12.71□□□□□ -0.38
TRIM3-211ENST00000532542 ZNF592Q92610 1267 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 PCMTD1Q96MG8 357 aaPredicted RBP12.71□□□□□ -0.38
TRIM3-211ENST00000532542 USP40Q9NVE5 1235 aa12.71□□□□□ -0.38
TRIM3-211ENST00000532542 CRAMP1Q96RY5 1269 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 DCP1AQ9NPI6 582 aaPredicted RBP12.7□□□□□ -0.38
TRIM3-211ENST00000532542 BMP2KQ9NSY1 1161 aaPredicted RBP12.7□□□□□ -0.38
TRIM3-211ENST00000532542 BTBD18B2RXH4 712 aa12.7□□□□□ -0.38
TRIM3-211ENST00000532542 CMA1P23946 247 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms