RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 BRCA2P51587 3418 aa20.62■□□□□ 0.89
CPSF1-207ENST00000531727 MGAMO43451 1857 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 TRIM75PA6NK02 468 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 IGSF3O75054 1194 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 PLCG2P16885 1265 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 OSBPP22059 807 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 HOXD10P28358 340 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 ZAP70P43403 619 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 CEP85Q6P2H3 762 aa20.61■□□□□ 0.89
CPSF1-207ENST00000531727 CCDC84Q86UT8 332 aaPredicted RBP20.61■□□□□ 0.89
CPSF1-207ENST00000531727 AATFQ9NY61 560 aaKnown RBP eCLIP20.61■□□□□ 0.89
CPSF1-207ENST00000531727 TLR7Q9NYK1 1049 aaKnown RBP20.61■□□□□ 0.89
CPSF1-207ENST00000531727 SIPA1L1O43166 1804 aa20.6■□□□□ 0.89
CPSF1-207ENST00000531727 PPP4CP60510 307 aa20.6■□□□□ 0.89
CPSF1-207ENST00000531727 SLC4A8Q2Y0W8 1093 aa20.6■□□□□ 0.89
CPSF1-207ENST00000531727 ADGRA1Q86SQ6 560 aa20.6■□□□□ 0.89
CPSF1-207ENST00000531727 PANK1Q8TE04 598 aa20.6■□□□□ 0.89
CPSF1-207ENST00000531727 EAF2Q96CJ1 260 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-207ENST00000531727 CCDC8Q9H0W5 538 aaPredicted RBP20.6■□□□□ 0.89
CPSF1-207ENST00000531727 PIH1D3Q9NQM4 214 aaKnown RBP20.6■□□□□ 0.89
CPSF1-207ENST00000531727 HERC5Q9UII4 1024 aaKnown RBP20.6■□□□□ 0.89
CPSF1-207ENST00000531727 LOC285556D6RIA3 1793 aa20.59■□□□□ 0.89
CPSF1-207ENST00000531727 MKI67P46013 3256 aaKnown RBP20.59■□□□□ 0.89
CPSF1-207ENST00000531727 CAP2P40123 477 aa20.59■□□□□ 0.89
CPSF1-207ENST00000531727 TBC1D2Q9BYX2 928 aa20.59■□□□□ 0.89
CPSF1-207ENST00000531727 DHX36Q9H2U1 1008 aaKnown RBP20.59■□□□□ 0.89
CPSF1-207ENST00000531727 PI4KBQ9UBF8 816 aa20.59■□□□□ 0.89
CPSF1-207ENST00000531727 AGTPBP1Q9UPW5 1226 aa20.59■□□□□ 0.89
CPSF1-207ENST00000531727 MYPNQ86TC9 1320 aa20.58■□□□□ 0.89
CPSF1-207ENST00000531727 MYCP01106 439 aaPredicted RBP20.58■□□□□ 0.89
CPSF1-207ENST00000531727 FCGRTP55899 365 aa20.58■□□□□ 0.89
CPSF1-207ENST00000531727 RAET1EQ8TD07 263 aa20.58■□□□□ 0.89
CPSF1-207ENST00000531727 FLT1P17948 1338 aa20.57■□□□□ 0.88
CPSF1-207ENST00000531727 RRP1BQ14684 758 aaKnown RBP20.57■□□□□ 0.88
CPSF1-207ENST00000531727 ERC1Q8IUD2 1116 aa20.57■□□□□ 0.88
CPSF1-207ENST00000531727 MAPKAPK5Q8IW41 473 aa20.57■□□□□ 0.88
CPSF1-207ENST00000531727 PROCA1Q8NCQ7 364 aaPredicted RBP20.57■□□□□ 0.88
CPSF1-207ENST00000531727 ZNF280CQ8ND82 737 aa20.57■□□□□ 0.88
CPSF1-207ENST00000531727 TGFBRAP1Q8WUH2 860 aa20.57■□□□□ 0.88
CPSF1-207ENST00000531727 EXOC6BQ9Y2D4 811 aa20.57■□□□□ 0.88
CPSF1-207ENST00000531727 KIAA0100Q14667 2235 aaKnown RBP20.56■□□□□ 0.88
CPSF1-207ENST00000531727 USP17L5A8MUK1 530 aa20.56■□□□□ 0.88
CPSF1-207ENST00000531727 MS4A1P11836 297 aa20.56■□□□□ 0.88
CPSF1-207ENST00000531727 GRK4P32298 578 aa20.56■□□□□ 0.88
CPSF1-207ENST00000531727 SPP2Q13103 211 aa20.56■□□□□ 0.88
CPSF1-207ENST00000531727 TREML2Q5T2D2 321 aa20.56■□□□□ 0.88
CPSF1-207ENST00000531727 SMCR8Q8TEV9 937 aaPredicted RBP20.56■□□□□ 0.88
CPSF1-207ENST00000531727 CYP7A1P22680 504 aa20.55■□□□□ 0.88
CPSF1-207ENST00000531727 PRKCZQ05513 592 aa20.55■□□□□ 0.88
CPSF1-207ENST00000531727 PNMA3Q9UL41 463 aa20.55■□□□□ 0.88
CPSF1-207ENST00000531727 IDH1O75874 414 aaKnown RBP20.54■□□□□ 0.88
CPSF1-207ENST00000531727 MTFR1Q15390 333 aa20.54■□□□□ 0.88
CPSF1-207ENST00000531727 AACSQ86V21 672 aa20.54■□□□□ 0.88
CPSF1-207ENST00000531727 METTL16Q86W50 562 aaKnown RBP20.54■□□□□ 0.88
CPSF1-207ENST00000531727 FOXP4Q8IVH2 680 aaPredicted RBP20.54■□□□□ 0.88
CPSF1-207ENST00000531727 DNAJC18Q9H819 358 aa20.54■□□□□ 0.88
CPSF1-207ENST00000531727 AS3MTQ9HBK9 375 aa20.54■□□□□ 0.88
CPSF1-207ENST00000531727 HMGCS2P54868 508 aa20.53■□□□□ 0.88
CPSF1-207ENST00000531727 DYNLL1P63167 89 aaKnown RBP20.53■□□□□ 0.88
CPSF1-207ENST00000531727 HSP90AB4PQ58FF6 505 aa20.53■□□□□ 0.88
CPSF1-207ENST00000531727 SH3D19Q5HYK7 790 aa20.53■□□□□ 0.88
CPSF1-207ENST00000531727 CERS3Q8IU89 383 aa20.53■□□□□ 0.88
CPSF1-207ENST00000531727 PALD1Q9ULE6 856 aa20.53■□□□□ 0.88
CPSF1-207ENST00000531727 GABRQQ9UN88 632 aa20.53■□□□□ 0.88
CPSF1-207ENST00000531727 ASNSP08243 561 aa20.52■□□□□ 0.88
CPSF1-207ENST00000531727 PABPC4Q13310 644 aaKnown RBP eCLIP20.52■□□□□ 0.883e-6■■■□□ 17
CPSF1-207ENST00000531727 CRACR2BQ8N4Y2 399 aaPredicted RBP20.52■□□□□ 0.88
CPSF1-207ENST00000531727 SLAIN1Q8ND83 568 aa20.52■□□□□ 0.88
CPSF1-207ENST00000531727 WDR18Q9BV38 432 aa20.52■□□□□ 0.88
CPSF1-207ENST00000531727 TRIM34Q9BYJ4 488 aa20.52■□□□□ 0.88
CPSF1-207ENST00000531727 NDUFB9Q9Y6M9 179 aa20.52■□□□□ 0.88
CPSF1-207ENST00000531727 MYH1P12882 1939 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 TNPO2O14787 897 aaKnown RBP20.51■□□□□ 0.87
CPSF1-207ENST00000531727 HLA-DOAP06340 250 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 FAM110CQ1W6H9 321 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 TMED8Q6PL24 325 aaPredicted RBP20.51■□□□□ 0.87
CPSF1-207ENST00000531727 ANKRD13CQ8N6S4 541 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 MAGEB6Q8N7X4 407 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 RHPN1Q8TCX5 695 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 GCC1Q96CN9 775 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 ANTXR1Q9H6X2 564 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 IL1RAPL2Q9NP60 686 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 GINM1Q9NU53 330 aa20.51■□□□□ 0.87
CPSF1-207ENST00000531727 SAP30BPQ9UHR5 308 aaKnown RBP20.51■□□□□ 0.87
CPSF1-207ENST00000531727 FLT3LGP49771 235 aa20.5■□□□□ 0.87
CPSF1-207ENST00000531727 UBXN2AP68543 259 aa20.5■□□□□ 0.87
CPSF1-207ENST00000531727 JAG1P78504 1218 aa20.5■□□□□ 0.87
CPSF1-207ENST00000531727 MAP3K12Q12852 859 aa20.5■□□□□ 0.87
CPSF1-207ENST00000531727 RPAP2Q8IXW5 612 aaPredicted RBP20.5■□□□□ 0.87
CPSF1-207ENST00000531727 MIGA1Q8NAN2 632 aa20.5■□□□□ 0.87
CPSF1-207ENST00000531727 BIN2Q9UBW5 565 aaPredicted RBP20.5■□□□□ 0.87
CPSF1-207ENST00000531727 DDX19BQ9UMR2 479 aa20.5■□□□□ 0.87
CPSF1-207ENST00000531727 ADCY3O60266 1144 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 CCL5P13501 91 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 GCLCP48506 637 aaPredicted RBP20.49■□□□□ 0.87
CPSF1-207ENST00000531727 BACE1P56817 501 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 MTMR2Q13614 643 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 NKX2-3Q8TAU0 364 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 SHISA4Q96DD7 197 aa20.49■□□□□ 0.87
CPSF1-207ENST00000531727 ZBTB40Q9NUA8 1239 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms