RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 IFIT2P09913 472 aaKnown RBP13□□□□□ -0.33
CD44-227ENST00000528086 PDE6AP16499 860 aa13□□□□□ -0.33
CD44-227ENST00000528086 TSHZ3Q63HK5 1081 aa13□□□□□ -0.33
CD44-227ENST00000528086 CTU1Q7Z7A3 348 aaKnown RBP13□□□□□ -0.33
CD44-227ENST00000528086 SCYL3Q8IZE3 742 aa13□□□□□ -0.33
CD44-227ENST00000528086 HAUS7Q99871 368 aa13□□□□□ -0.33
CD44-227ENST00000528086 LRRCC1Q9C099 1032 aa13□□□□□ -0.33
CD44-227ENST00000528086 BCL11AQ9H165 835 aa13□□□□□ -0.33
CD44-227ENST00000528086 PALD1Q9ULE6 856 aa13□□□□□ -0.33
CD44-227ENST00000528086 BAZ2AQ9UIF9 1905 aaKnown RBP13□□□□□ -0.33
CD44-227ENST00000528086 FKTNO75072 461 aa12.99□□□□□ -0.33
CD44-227ENST00000528086 CTGFP29279 349 aa12.99□□□□□ -0.33
CD44-227ENST00000528086 SNAPC2Q13487 334 aa12.99□□□□□ -0.33
CD44-227ENST00000528086 DNAJC2Q99543 621 aaKnown RBP12.99□□□□□ -0.33
CD44-227ENST00000528086 CHMP4BQ9H444 224 aaKnown RBP12.99□□□□□ -0.33
CD44-227ENST00000528086 SAP30BPQ9UHR5 308 aaKnown RBP12.99□□□□□ -0.33
CD44-227ENST00000528086 ZHX2Q9Y6X8 837 aa12.99□□□□□ -0.33
CD44-227ENST00000528086 NAV1Q8NEY1 1877 aa12.99□□□□□ -0.33
CD44-227ENST00000528086 LOC285556D6RIA3 1793 aa12.99□□□□□ -0.33
CD44-227ENST00000528086 TNRC18O15417 2968 aaPredicted RBP12.99□□□□□ -0.33
CD44-227ENST00000528086 SALL3Q9BXA9 1300 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 ZNF532Q9HCE3 1301 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 CTNND1O60716 968 aaKnown RBP12.98□□□□□ -0.33
CD44-227ENST00000528086 IGSF3O75054 1194 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 CETPP11597 493 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 SLC4A8Q2Y0W8 1093 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 CD99L2Q8TCZ2 262 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 DOCK3Q8IZD9 2030 aa12.98□□□□□ -0.33
CD44-227ENST00000528086 A0A0G2JLL6 359 aaPredicted RBP12.97□□□□□ -0.33
CD44-227ENST00000528086 CXCL11O14625 94 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 BAG3O95817 575 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 PLCG2P16885 1265 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 ADD2P35612 726 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 CAP2P40123 477 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 PLCD1P51178 756 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 TAF1CQ15572 869 aaPredicted RBP12.97□□□□□ -0.33
CD44-227ENST00000528086 SLC9C2Q5TAH2 1124 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 C17orf99Q6UX52 265 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 OTOP1Q7RTM1 612 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 PRRT2Q7Z6L0 340 aaPredicted RBP12.97□□□□□ -0.33
CD44-227ENST00000528086 LCORLQ8N3X6 602 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 ARHGAP39Q9C0H5 1083 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.97□□□□□ -0.33
CD44-227ENST00000528086 PAG1Q9NWQ8 432 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 PI4KBQ9UBF8 816 aa12.97□□□□□ -0.33
CD44-227ENST00000528086 MKI67P46013 3256 aaKnown RBP12.96□□□□□ -0.33
CD44-227ENST00000528086 PRKAB2O43741 272 aa12.96□□□□□ -0.33
CD44-227ENST00000528086 TLR2O60603 784 aa12.96□□□□□ -0.33
CD44-227ENST00000528086 MAP3K12Q12852 859 aa12.96□□□□□ -0.33
CD44-227ENST00000528086 ANKRD23Q86SG2 305 aa12.96□□□□□ -0.33
CD44-227ENST00000528086 HPS5Q9UPZ3 1129 aa12.96□□□□□ -0.33
CD44-227ENST00000528086 MGAMO43451 1857 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 CCDC85CA6NKD9 419 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 PDHXO00330 501 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 CYP2D6P10635 497 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 SP3Q02447 781 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 GABPAQ06546 454 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 TREML2Q5T2D2 321 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 PI4K2BQ8TCG2 481 aa12.95□□□□□ -0.34
CD44-227ENST00000528086 DHX36Q9H2U1 1008 aaKnown RBP12.95□□□□□ -0.34
CD44-227ENST00000528086 ZCCHC17Q9NP64 241 aaKnown RBP12.95□□□□□ -0.34
CD44-227ENST00000528086 HERC5Q9UII4 1024 aaKnown RBP12.95□□□□□ -0.34
CD44-227ENST00000528086 MAGEB6P1A0A0J9YX57 407 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 TRIM75PA6NK02 468 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 CYP2C8P10632 490 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 SHMT1P34896 483 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 RGS19P49795 217 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 TTF1Q15361 905 aaPredicted RBP12.94□□□□□ -0.34
CD44-227ENST00000528086 OTUD7BQ6GQQ9 843 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 POTEEQ6S8J3 1075 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 POTEDQ86YR6 584 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 FOXP4Q8IVH2 680 aaPredicted RBP12.94□□□□□ -0.34
CD44-227ENST00000528086 SDR42E1Q8WUS8 393 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 PUS7LQ9H0K6 701 aaKnown RBP12.94□□□□□ -0.34
CD44-227ENST00000528086 ARMT1Q9H993 441 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 ZFYVE28Q9HCC9 887 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 DCP1AQ9NPI6 582 aaPredicted RBP12.94□□□□□ -0.34
CD44-227ENST00000528086 ECHDC1Q9NTX5 307 aa12.94□□□□□ -0.34
CD44-227ENST00000528086 GDF11O95390 407 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 IGHDP01880 384 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 BCRP11274 1271 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 GUCY1A2P33402 732 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 SPP2Q13103 211 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 HDAC1Q13547 482 aaPredicted RBP12.93□□□□□ -0.34
CD44-227ENST00000528086 TATDN1Q6P1N9 297 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 FBXO46Q6PJ61 603 aaPredicted RBP12.93□□□□□ -0.34
CD44-227ENST00000528086 TMED8Q6PL24 325 aaPredicted RBP12.93□□□□□ -0.34
CD44-227ENST00000528086 EXOC6Q8TAG9 804 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 NOL10Q9BSC4 688 aaKnown RBP12.93□□□□□ -0.34
CD44-227ENST00000528086 PICK1Q9NRD5 415 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 CPA4Q9UI42 421 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 TRIM17Q9Y577 477 aa12.93□□□□□ -0.34
CD44-227ENST00000528086 KIAA0100Q14667 2235 aaKnown RBP12.93□□□□□ -0.34
CD44-227ENST00000528086 MBD4O95243 580 aa12.92□□□□□ -0.34
CD44-227ENST00000528086 UBE3CQ15386 1083 aa12.92□□□□□ -0.34
CD44-227ENST00000528086 SH3D19Q5HYK7 790 aa12.92□□□□□ -0.34
CD44-227ENST00000528086 SLC44A5Q8NCS7 719 aa12.92□□□□□ -0.34
CD44-227ENST00000528086 WDR18Q9BV38 432 aa12.92□□□□□ -0.34
CD44-227ENST00000528086 EHD4Q9H223 541 aa12.92□□□□□ -0.34
CD44-227ENST00000528086 ZBTB21Q9ULJ3 1066 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms