RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 GGT7Q9UJ14 662 aa8.03□□□□□ -1.12
CD44-223ENST00000526553 FAM221AA4D161 298 aa8.02□□□□□ -1.13
CD44-223ENST00000526553 CILPO75339 1184 aa8.02□□□□□ -1.13
CD44-223ENST00000526553 LRP8Q14114 963 aa8.02□□□□□ -1.13
CD44-223ENST00000526553 BNC2Q6ZN30 1099 aaPredicted RBP8.02□□□□□ -1.13
CD44-223ENST00000526553 JARID2Q92833 1246 aaPredicted RBP8.02□□□□□ -1.13
CD44-223ENST00000526553 PSMG3-AS1Q96PY0 264 aa8.02□□□□□ -1.13
CD44-223ENST00000526553 COPRSQ9NQ92 184 aa8.02□□□□□ -1.13
CD44-223ENST00000526553 PIM2Q9P1W9 311 aa8.02□□□□□ -1.13
CD44-223ENST00000526553 FAM170BA6NMN3 283 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 GARTP22102 1010 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 ZNF76P36508 570 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 GRIK1P39086 918 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 FANCCQ00597 558 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 CDK5R2Q13319 367 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 SNAP47Q5SQN1 464 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 INTS5Q6P9B9 1019 aaKnown RBP8.01□□□□□ -1.13
CD44-223ENST00000526553 OGFOD3Q6PK18 319 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 CDC37L1Q7L3B6 337 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 UBE3DQ7Z6J8 389 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 MRRFQ96E11 262 aaKnown RBP8.01□□□□□ -1.13
CD44-223ENST00000526553 LEMD3Q9Y2U8 911 aa8.01□□□□□ -1.13
CD44-223ENST00000526553 MINDY4BA8MYZ0 360 aa8□□□□□ -1.13
CD44-223ENST00000526553 COBLO75128 1261 aa8□□□□□ -1.13
CD44-223ENST00000526553 BPNT1O95861 308 aa8□□□□□ -1.13
CD44-223ENST00000526553 F13A1P00488 732 aa8□□□□□ -1.13
CD44-223ENST00000526553 CAP2P40123 477 aa8□□□□□ -1.13
CD44-223ENST00000526553 CD97P48960 835 aa8□□□□□ -1.13
CD44-223ENST00000526553 ETF1P62495 437 aaKnown RBP8□□□□□ -1.13
CD44-223ENST00000526553 FAM160A1Q05DH4 1040 aa8□□□□□ -1.13
CD44-223ENST00000526553 DUSP27Q5VZP5 1158 aa8□□□□□ -1.13
CD44-223ENST00000526553 ZNF765Q7L2R6 523 aa8□□□□□ -1.13
CD44-223ENST00000526553 SCO2A0A1W2PP80 73 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 UNCXA6NJT0 531 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 KIAA1324LA8MWY0 1029 aaPredicted RBP7.99□□□□□ -1.13
CD44-223ENST00000526553 SCAMP3O14828 347 aaKnown RBP7.99□□□□□ -1.13
CD44-223ENST00000526553 FAM87AP0C7U9 286 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 FOSL1P15407 271 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 GRK4P32298 578 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 EIF4A3P38919 411 aaKnown RBP7.99□□□□□ -1.13
CD44-223ENST00000526553 MPP2Q14168 576 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 CYP27C1Q4G0S4 372 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 HID1Q8IV36 788 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 GOLM1Q8NBJ4 401 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 FBRSQ9HAH7 460 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 PODXL2Q9NZ53 605 aa7.99□□□□□ -1.13
CD44-223ENST00000526553 KIAA1522Q9P206 1035 aaPredicted RBP7.99□□□□□ -1.13
CD44-223ENST00000526553 SUPT16HQ9Y5B9 1047 aaKnown RBP7.99□□□□□ -1.13
CD44-223ENST00000526553 LRIG2O94898 1065 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 PDE4BQ07343 736 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 ARTNQ5T4W7 220 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 FAM196AQ6ZSG2 479 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 DUSP23Q9BVJ7 150 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 LRRC3Q9BY71 257 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 ADAM30Q9UKF2 790 aa7.98□□□□□ -1.13
CD44-223ENST00000526553 ROBO2Q9HCK4 1378 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 GREM1O60565 184 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 SLBPQ14493 270 aaKnown RBP eCLIP7.97□□□□□ -1.13
CD44-223ENST00000526553 FBXL19Q6PCT2 694 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 ARMCX6Q7L4S7 300 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 TOP6BLQ8N6T0 577 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 RNF34Q969K3 372 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 PRDM10Q9NQV6 1147 aa7.97□□□□□ -1.13
CD44-223ENST00000526553 CYP26A1O43174 497 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 LEFTY1O75610 366 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 PGRP06401 933 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 SSTR4P31391 388 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 REC114Q7Z4M0 266 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 MRPL41Q8IXM3 137 aaKnown RBP7.96□□□□□ -1.14
CD44-223ENST00000526553 Q8N3U1 123 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 FOXQ1Q9C009 403 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 ZFP64Q9NPA5 681 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 ADAMTS1Q9UHI8 967 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 PRR36Q9H6K5 1346 aa7.96□□□□□ -1.14
CD44-223ENST00000526553 HYAL3O43820 417 aaPredicted RBP7.95□□□□□ -1.14
CD44-223ENST00000526553 MED26O95402 600 aa7.95□□□□□ -1.14
CD44-223ENST00000526553 SPINK2P20155 84 aa7.95□□□□□ -1.14
CD44-223ENST00000526553 HOXA10P31260 410 aaPredicted RBP7.95□□□□□ -1.14
CD44-223ENST00000526553 NKG7Q16617 165 aa7.95□□□□□ -1.14
CD44-223ENST00000526553 MSMPQ1L6U9 139 aa7.95□□□□□ -1.14
CD44-223ENST00000526553 MFSD2AQ8NA29 543 aa7.95□□□□□ -1.14
CD44-223ENST00000526553 ZNF296Q8WUU4 475 aaPredicted RBP7.95□□□□□ -1.14
CD44-223ENST00000526553 CST3P01034 146 aaPredicted RBP7.94□□□□□ -1.14
CD44-223ENST00000526553 CWF19L2Q2TBE0 894 aaKnown RBP7.94□□□□□ -1.14
CD44-223ENST00000526553 USP48Q86UV5 1035 aa7.94□□□□□ -1.14
CD44-223ENST00000526553 DTX1Q86Y01 620 aa7.94□□□□□ -1.14
CD44-223ENST00000526553 FBXO27Q8NI29 283 aa7.94□□□□□ -1.14
CD44-223ENST00000526553 PCMTD2Q9NV79 361 aa7.94□□□□□ -1.14
CD44-223ENST00000526553 TJP2Q9UDY2 1190 aa7.94□□□□□ -1.14
CD44-223ENST00000526553 POLR3KQ9Y2Y1 108 aaPredicted RBP7.94□□□□□ -1.14
CD44-223ENST00000526553 TMEM201Q5SNT2 666 aa7.93□□□□□ -1.14
CD44-223ENST00000526553 PRAMEF13Q5VWM6 474 aa7.93□□□□□ -1.14
CD44-223ENST00000526553 SLC6A19Q695T7 634 aa7.93□□□□□ -1.14
CD44-223ENST00000526553 METTL16Q86W50 562 aaKnown RBP7.93□□□□□ -1.14
CD44-223ENST00000526553 MCATQ8IVS2 390 aaKnown RBP7.93□□□□□ -1.14
CD44-223ENST00000526553 ACSF2Q96CM8 615 aaPredicted RBP7.93□□□□□ -1.14
CD44-223ENST00000526553 TMEM87BQ96K49 555 aa7.93□□□□□ -1.14
CD44-223ENST00000526553 MKNK2Q9HBH9 465 aa7.93□□□□□ -1.14
CD44-223ENST00000526553 LRRC4CQ9HCJ2 640 aa7.93□□□□□ -1.14
CD44-223ENST00000526553 CORINQ9Y5Q5 1042 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms