RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 PODXL2Q9NZ53 605 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 MKRN1Q9UHC7 482 aaKnown RBP18.51■□□□□ 0.55
USH1C-204ENST00000526313 MRVI1Q9Y6F6 885 aa18.51■□□□□ 0.55
USH1C-204ENST00000526313 TNKSO95271 1327 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 ATP2B4P23634 1241 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 CRACR2BQ8N4Y2 399 aaPredicted RBP18.5■□□□□ 0.55
USH1C-204ENST00000526313 ENAHQ8N8S7 591 aaPredicted RBP18.5■□□□□ 0.55
USH1C-204ENST00000526313 ZSCAN10Q96SZ4 725 aaPredicted RBP18.5■□□□□ 0.55
USH1C-204ENST00000526313 EP400Q96L91 3159 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 CTAGE5O15320 804 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 ME1P48163 572 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 PPP4CP60510 307 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 FAM160A1Q05DH4 1040 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 STK11IPQ8N1F8 1099 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 LAMB1P07942 1786 aa18.5■□□□□ 0.55
USH1C-204ENST00000526313 ANO1Q5XXA6 986 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 SLC26A6Q9BXS9 759 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 ARPP21Q9UBL0 812 aaPredicted RBP18.49■□□□□ 0.55
USH1C-204ENST00000526313 LDHBP07195 334 aaKnown RBP18.49■□□□□ 0.55
USH1C-204ENST00000526313 IL1R1P14778 569 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 NT5C2P49902 561 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 ZSCAN30Q86W11 494 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 DZIP1Q86YF9 867 aaKnown RBP18.49■□□□□ 0.55
USH1C-204ENST00000526313 CKAP2LQ8IYA6 745 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 FAM200AQ8TCP9 573 aa18.49■□□□□ 0.55
USH1C-204ENST00000526313 PLSCR1O15162 318 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 SPTLC2O15270 562 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 SLC39A14Q15043 492 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 STK38Q15208 465 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 CCDC73Q6ZRK6 1079 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.48■□□□□ 0.55
USH1C-204ENST00000526313 CD209Q9NNX6 404 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 LRRC37AA6NMS7 1700 aa18.48■□□□□ 0.55
USH1C-204ENST00000526313 UBE2Q2LH0YL09 131 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 DEXIO95424 95 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 GUCY1A2P33402 732 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 GSTO1P78417 241 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 AXDND1Q5T1B0 1012 aaPredicted RBP18.47■□□□□ 0.55
USH1C-204ENST00000526313 TRIM22Q8IYM9 498 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 FMR1NBQ8N0W7 255 aaPredicted RBP18.47■□□□□ 0.55
USH1C-204ENST00000526313 FSIP1Q8NA03 581 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 JAG2Q9Y219 1238 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 LTBP1Q14766 1721 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 RBM6P78332 1123 aaKnown RBP18.47■□□□□ 0.55
USH1C-204ENST00000526313 FUT2Q10981 343 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 TRIM29Q14134 588 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 TMC4Q7Z404 712 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 IQCA1Q86XH1 822 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 MRPS27Q92552 414 aaKnown RBP18.47■□□□□ 0.55
USH1C-204ENST00000526313 GGA1Q9UJY5 639 aa18.47■□□□□ 0.55
USH1C-204ENST00000526313 NOL7Q9UMY1 257 aaKnown RBP18.47■□□□□ 0.55
USH1C-204ENST00000526313 UFL1O94874 794 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 TROAPQ12815 778 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 GRIK5Q16478 980 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 AKT1S1Q96B36 256 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 MAP3K14Q99558 947 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 NRXN2Q9P2S2 1712 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 USP25Q9UHP3 1055 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 CAVIN2O95810 425 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 MMP1P03956 469 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 SLC3A2P08195 630 aaKnown RBP18.46■□□□□ 0.55
USH1C-204ENST00000526313 EVX2Q03828 476 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 PTPAQ15257 358 aa18.46■□□□□ 0.55
USH1C-204ENST00000526313 GPR101Q96P66 508 aaPredicted RBP18.46■□□□□ 0.55
USH1C-204ENST00000526313 RNF26Q9BY78 433 aaPredicted RBP18.46■□□□□ 0.55
USH1C-204ENST00000526313 PPP6R2O75170 966 aa18.45■□□□□ 0.54
USH1C-204ENST00000526313 PRDM1O75626 825 aa18.45■□□□□ 0.54
USH1C-204ENST00000526313 LDHCP07864 332 aa18.45■□□□□ 0.54
USH1C-204ENST00000526313 IFIT1BQ5T764 474 aaKnown RBP18.45■□□□□ 0.54
USH1C-204ENST00000526313 C12orf60Q5U649 245 aa18.45■□□□□ 0.54
USH1C-204ENST00000526313 TBC1D16Q8TBP0 767 aa18.45■□□□□ 0.54
USH1C-204ENST00000526313 CCDC39Q9UFE4 941 aa18.45■□□□□ 0.54
USH1C-204ENST00000526313 KINO60870 393 aaKnown RBP18.44■□□□□ 0.54
USH1C-204ENST00000526313 DDAH1O94760 285 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CALM1P0DP23 149 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CALM2P0DP24 149 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CALM3P0DP25 149 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CYP2D6P10635 497 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CMA1P23946 247 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 SF3A1Q15459 793 aaKnown RBP18.44■□□□□ 0.54
USH1C-204ENST00000526313 SASS6Q6UVJ0 657 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CERS3Q8IU89 383 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 SP8Q8IXZ3 490 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 NUP133Q8WUM0 1156 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.44■□□□□ 0.54
USH1C-204ENST00000526313 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.44■□□□□ 0.54
USH1C-204ENST00000526313 POLLQ9UGP5 575 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 ANKRD31Q8N7Z5 1873 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 ADCY5O95622 1261 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 PDE4BQ07343 736 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 ZNF827Q17R98 1081 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 ANO6Q4KMQ2 910 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 CATIPQ7Z7H3 387 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 NLGN1Q8N2Q7 840 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 FOXP1Q9H334 677 aaPredicted RBP18.44■□□□□ 0.54
USH1C-204ENST00000526313 RBM28Q9NW13 759 aaKnown RBP18.44■□□□□ 0.54
USH1C-204ENST00000526313 ROBO3Q96MS0 1386 aa18.44■□□□□ 0.54
USH1C-204ENST00000526313 FAM237AA0A1B0GTK4 181 aa18.43■□□□□ 0.54
USH1C-204ENST00000526313 AP5Z1O43299 807 aa18.43■□□□□ 0.54
USH1C-204ENST00000526313 PRPF3O43395 683 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms