RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 ISY1Q9ULR0 285 aaKnown RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 POLR2AP24928 1970 aaKnown RBP6.34□□□□□ -1.39
CD44-218ENST00000525469 ANKRD26Q9UPS8 1709 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 A0A087WZG4 1122 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 FZD9O00144 591 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 FYB1O15117 783 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 TRPA1O75762 1119 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 IARSP41252 1262 aaKnown RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 TERF1P54274 439 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 CNGB1Q14028 1251 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 GAS6Q14393 721 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 ARSJQ5FYB0 599 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 ZNF530Q6P9A1 599 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 DNAJC10Q8IXB1 793 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 CNBD1Q8NA66 436 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.33□□□□□ -1.4
CD44-218ENST00000525469 L3MBTL2Q969R5 705 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 TRIM44Q96DX7 344 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 RUBCNLQ9H714 662 aa6.33□□□□□ -1.4
CD44-218ENST00000525469 SCHIP1Q9P0W5 487 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 MAFBQ9Y5Q3 323 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 GPC6Q9Y625 555 aaPredicted RBP6.33□□□□□ -1.4
CD44-218ENST00000525469 SRGNP10124 158 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 CANXP27824 592 aaKnown RBP6.32□□□□□ -1.4
CD44-218ENST00000525469 EPS15P42566 896 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 HUNKP57058 714 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 RBM10P98175 930 aaKnown RBP6.32□□□□□ -1.4
CD44-218ENST00000525469 ZNF385CQ66K41 422 aaPredicted RBP6.32□□□□□ -1.4
CD44-218ENST00000525469 PRR5LQ6MZQ0 368 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 SIX5Q8N196 739 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 SETDB2Q96T68 719 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 CARD11Q9BXL7 1154 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 TFIP11Q9UBB9 837 aaKnown RBP6.32□□□□□ -1.4
CD44-218ENST00000525469 ZNF232Q9UNY5 417 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 IQSEC3Q9UPP2 1182 aaPredicted RBP6.32□□□□□ -1.4
CD44-218ENST00000525469 NCAPD2Q15021 1401 aa6.32□□□□□ -1.4
CD44-218ENST00000525469 CYP19A1P11511 503 aaPredicted RBP6.31□□□□□ -1.4
CD44-218ENST00000525469 RASA1P20936 1047 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 MARSP56192 900 aaKnown RBP6.31□□□□□ -1.4
CD44-218ENST00000525469 PSMA6P60900 246 aaKnown RBP6.31□□□□□ -1.4
CD44-218ENST00000525469 AMOTQ4VCS5 1084 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 TBC1D9BQ66K14 1250 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 SLC9A9Q8IVB4 645 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 SYNE4Q8N205 404 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 ZNF594Q96JF6 807 aaPredicted RBP6.31□□□□□ -1.4
CD44-218ENST00000525469 PPP1R12CQ9BZL4 782 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 NEUROD4Q9HD90 331 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 RNF186Q9NXI6 227 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 ZBTB1Q9Y2K1 713 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 PCDHGC4Q9Y5F7 938 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 SCN11AQ9UI33 1791 aa6.31□□□□□ -1.4
CD44-218ENST00000525469 SERTM1A2A2V5 107 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 BCRP11274 1271 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 BMP4P12644 408 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 NPR1P16066 1061 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 ATP4AP20648 1035 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 ZNF157P51786 506 aaPredicted RBP6.3□□□□□ -1.4
CD44-218ENST00000525469 CLDN10P78369 228 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 TEAD4Q15561 434 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 RGMBQ6NW40 437 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 CDC37L1Q7L3B6 337 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 PODNQ7Z5L7 613 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 SCARF2Q96GP6 870 aaPredicted RBP6.3□□□□□ -1.4
CD44-218ENST00000525469 ZIC5Q96T25 663 aa6.3□□□□□ -1.4
CD44-218ENST00000525469 GLIS2Q9BZE0 524 aaPredicted RBP6.3□□□□□ -1.4
CD44-218ENST00000525469 ADARB2Q9NS39 739 aaKnown RBP6.3□□□□□ -1.4
CD44-218ENST00000525469 GDF2Q9UK05 429 aaPredicted RBP6.3□□□□□ -1.4
CD44-218ENST00000525469 KIAA0100Q14667 2235 aaKnown RBP6.3□□□□□ -1.4
CD44-218ENST00000525469 BCORQ6W2J9 1755 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 ATXN7O15265 892 aaPredicted RBP6.29□□□□□ -1.4
CD44-218ENST00000525469 STARD3NLO95772 234 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 FGFR3P22607 806 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 ALDH1B1P30837 517 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 EPHA4P54764 986 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 SEC13P55735 322 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 FOXK2Q01167 660 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 KIF23Q02241 960 aaPredicted RBP6.29□□□□□ -1.4
CD44-218ENST00000525469 GOLGA6L1Q8N7Z2 621 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 C2orf69Q8N8R5 385 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 C7orf43Q8WVR3 580 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 OXCT2Q9BYC2 517 aaPredicted RBP6.29□□□□□ -1.4
CD44-218ENST00000525469 ADAMTS8Q9UP79 889 aa6.29□□□□□ -1.4
CD44-218ENST00000525469 ZBED9Q6R2W3 1325 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 A0A1W2PNR3 127 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 GOLGA6L3A6NEY3 463 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 FAM196BA6NMK8 535 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 CELA2BP08218 269 aaPredicted RBP6.28□□□□□ -1.4
CD44-218ENST00000525469 NOS2P35228 1153 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 HIF1AQ16665 826 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 SAMD5Q5TGI4 173 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 FBXO46Q6PJ61 603 aaPredicted RBP6.28□□□□□ -1.4
CD44-218ENST00000525469 NBPF5PQ86XG9 351 aaPredicted RBP6.28□□□□□ -1.4
CD44-218ENST00000525469 NIM1KQ8IY84 436 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 SMAP1Q8IYB5 467 aaPredicted RBP6.28□□□□□ -1.4
CD44-218ENST00000525469 NEDD1Q8NHV4 660 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 GAS2L2Q8NHY3 880 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 ABHD17AQ96GS6 310 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 NAP1L5Q96NT1 182 aaPredicted RBP6.28□□□□□ -1.4
CD44-218ENST00000525469 PSMD1Q99460 953 aa6.28□□□□□ -1.4
CD44-218ENST00000525469 VRTNQ9H8Y1 702 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms