RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 DDB1Q16531 1140 aa15.57■□□□□ 0.08
SYNPO-205ENST00000522122 NEK11Q8NG66 645 aa15.57■□□□□ 0.08
SYNPO-205ENST00000522122 USP42Q9H9J4 1324 aaKnown RBP15.57■□□□□ 0.08
SYNPO-205ENST00000522122 PHACTR2O75167 634 aa15.57■□□□□ 0.08
SYNPO-205ENST00000522122 MTX1Q13505 466 aa15.57■□□□□ 0.08
SYNPO-205ENST00000522122 ZNF589Q86UQ0 364 aaPredicted RBP15.57■□□□□ 0.08
SYNPO-205ENST00000522122 POLR2DO15514 142 aaKnown RBP15.56■□□□□ 0.08
SYNPO-205ENST00000522122 CCT6AP40227 531 aaKnown RBP15.56■□□□□ 0.08
SYNPO-205ENST00000522122 ZNF496Q96IT1 587 aaPredicted RBP15.56■□□□□ 0.08
SYNPO-205ENST00000522122 CCDC122Q5T0U0 273 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 TPTE2Q6XPS3 522 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 COPRSQ9NQ92 184 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 ITSN1Q15811 1721 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 ANKRD26Q9UPS8 1709 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 A0A1W2PQ27 194 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 A0A1W2PQ64 194 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 A0A1W2PQD8 194 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 CCDC174Q6PII3 467 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 C11orf57Q6ZUT1 292 aaPredicted RBP15.56■□□□□ 0.08
SYNPO-205ENST00000522122 BBXQ8WY36 941 aaPredicted RBP15.56■□□□□ 0.08
SYNPO-205ENST00000522122 VPS18Q9P253 973 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 TNNI2P48788 182 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 PUM3Q15397 648 aaKnown RBP15.56■□□□□ 0.08
SYNPO-205ENST00000522122 KRT40Q6A162 431 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 PLIN2Q99541 437 aa15.56■□□□□ 0.08
SYNPO-205ENST00000522122 A1BGP04217 495 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 PLCG2P16885 1265 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ST5P78524 1137 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 OVOS2A0A0J9YW53 1432 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 OVOS2Q6IE36 1432 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ANKARQ7Z5J8 1434 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ZNF804AQ7Z570 1209 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 CCDC155Q8N6L0 562 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 NYXQ9GZU5 481 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ZNF215Q9UL58 517 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ARHGAP6O43182 974 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 PROSER3Q2NL68 480 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 MYSM1Q5VVJ2 828 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 LMBR1Q8WVP7 490 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 NCAPD2Q15021 1401 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 SH3TC1Q8TE82 1336 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 PSDA5PKW4 1024 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-205ENST00000522122 VAV2P52735 878 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 PLA2G4DQ86XP0 818 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 NSUN7Q8NE18 718 aaKnown RBP15.55■□□□□ 0.08
SYNPO-205ENST00000522122 CACTINQ8WUQ7 758 aaKnown RBP15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ATRIPQ8WXE1 791 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 VPS16Q9H269 839 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ALDH8A1Q9H2A2 487 aaPredicted RBP15.55■□□□□ 0.08
SYNPO-205ENST00000522122 ARMT1Q9H993 441 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 PCDHA7Q9UN72 937 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 NFE2L3Q9Y4A8 694 aa15.55■□□□□ 0.08
SYNPO-205ENST00000522122 KRT13P13646 458 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 TBC1D8BQ0IIM8 1120 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 SARM1Q6SZW1 724 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 GIGYF2Q6Y7W6 1299 aaKnown RBP15.54■□□□□ 0.08
SYNPO-205ENST00000522122 HDXQ7Z353 690 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 RTEL1Q9NZ71 1219 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 V9GY48 417 aaPredicted RBP15.54■□□□□ 0.08
SYNPO-205ENST00000522122 TUBB2AQ13885 445 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 UBE4AQ14139 1066 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 TUBB2BQ9BVA1 445 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 ADGRL3Q9HAR2 1447 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 PICALMQ13492 652 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 SEC62Q99442 399 aaKnown RBP15.54■□□□□ 0.08
SYNPO-205ENST00000522122 CARD6Q9BX69 1037 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 F8W031 263 aaPredicted RBP15.54■□□□□ 0.08
SYNPO-205ENST00000522122 PFKFB1P16118 471 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 PRPHP41219 470 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 PPP1R2P41236 205 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 PLCD1P51178 756 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 ORAI2Q96SN7 254 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 DENND2AQ9ULE3 1009 aa15.54■□□□□ 0.08
SYNPO-205ENST00000522122 LDHBP07195 334 aaKnown RBP15.53■□□□□ 0.08
SYNPO-205ENST00000522122 RBM6P78332 1123 aaKnown RBP15.53■□□□□ 0.08
SYNPO-205ENST00000522122 PHKBQ93100 1093 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 MNAT1P51948 309 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 TRIM14Q14142 442 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 ANKRD2Q9GZV1 360 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 RCOR1Q9UKL0 485 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 TTF2Q9UNY4 1162 aaKnown RBP15.53■□□□□ 0.08
SYNPO-205ENST00000522122 PDE8AO60658 829 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 NEBLO76041 1014 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 TOB2Q14106 344 aaPredicted RBP15.53■□□□□ 0.08
SYNPO-205ENST00000522122 DBNLQ9UJU6 430 aaKnown RBP15.53■□□□□ 0.08
SYNPO-205ENST00000522122 SCLT1Q96NL6 688 aa15.53■□□□□ 0.08
SYNPO-205ENST00000522122 EBAG9O00559 213 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 HSPD1P10809 573 aaKnown RBP15.52■□□□□ 0.08
SYNPO-205ENST00000522122 PDIA3P30101 505 aaKnown RBP15.52■□□□□ 0.08
SYNPO-205ENST00000522122 USP37Q86T82 979 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 PPP1R13BQ96KQ4 1090 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 CTNND2Q9UQB3 1225 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 TMEM131LA2VDJ0 1609 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 CLTCQ00610 1675 aaKnown RBP15.52■□□□□ 0.08
SYNPO-205ENST00000522122 CARMIL3Q8ND23 1372 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 CMA1P23946 247 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 ZAP70P43403 619 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 NBPF11Q86T75 865 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 SMARCC2Q8TAQ2 1214 aa15.52■□□□□ 0.08
SYNPO-205ENST00000522122 RFX7Q2KHR2 1363 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms