RNA–Protein interactions for RNA: ENST00000520580.5

SREK1-208, Transcript of splicing regulatory glutamic acid and lysine rich protein 1, human

TSL 2

Gene SREK1, Length 2,369 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREK1-208	ENST00000520580	SLC9A7	Q96T83	725 aa		4.81	□□□□□ -1.64
SREK1-208	ENST00000520580	ASPSCR1	Q9BZE9	553 aa		4.81	□□□□□ -1.64
SREK1-208	ENST00000520580	SH2B1	Q9NRF2	756 aa	Predicted RBP	4.81	□□□□□ -1.64
SREK1-208	ENST00000520580	GSG1L2	A8MUP6	293 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.8	□□□□□ -1.64	2e-7	■□□□□ 8.7
SREK1-208	ENST00000520580	CPB1	P15086	417 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	NRL	P54845	237 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	PPP4R4	Q6NUP7	873 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	PDZD3	Q86UT5	571 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	KLHL6	Q8WZ60	621 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	ATG4C	Q96DT6	458 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	SLC26A8	Q96RN1	970 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	CHST12	Q9NRB3	414 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	NOB1	Q9ULX3	412 aa	Known RBP	4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	MRPS23	Q9Y3D9	190 aa	Known RBP	4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	MEIS3P2	A8K0S8	358 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	MAP3K6	O95382	1288 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	IRX6	P78412	446 aa	Predicted RBP	4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	GPLD1	P80108	840 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	UBE4A	Q14139	1066 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	LRRFIP1	Q32MZ4	808 aa	Known RBP	4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	TSHZ1	Q6ZSZ6	1077 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	NLRC3	Q7RTR2	1065 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	MYO1H	Q8N1T3	1032 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	GPBAR1	Q8TDU6	330 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	SLC7A3	Q8WY07	619 aa		4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	SOS2	Q07890	1332 aa	Predicted RBP	4.8	□□□□□ -1.64
SREK1-208	ENST00000520580	PRAMEF27	A3QJZ7	478 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	RASGRP1	O95267	797 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	TP53	P04637	393 aa	Predicted RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	NME1	P15531	152 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	PLCG1	P19174	1290 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	UBAP2L	Q14157	1087 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	NCAPH	Q15003	741 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	TDRD10	Q5VZ19	366 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	SLC4A10	Q6U841	1118 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	MICALL1	Q8N3F8	863 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	ZNF669	Q96BR6	464 aa	Predicted RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	KIF2C	Q99661	725 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	EMILIN2	Q9BXX0	1053 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	UBE2O	Q9C0C9	1292 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	NUCKS1	Q9H1E3	243 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	PHAX	Q9H814	394 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	ARHGEF4	Q9NR80	690 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	GMIP	Q9P107	970 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	TRIM33	Q9UPN9	1127 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	SLC12A7	Q9Y666	1083 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580		A0A1W2PQU0	124 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	SLC22A31	A6NKX4	558 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	AKAP10	O43572	662 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	EIF3J	O75822	258 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	KRT18	P05783	430 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	GSTP1	P09211	210 aa	Known RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	ESRRA	P11474	423 aa	Predicted RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	PAX3	P23760	479 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	PML	P29590	882 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	GRIA2	P42262	883 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	SLC7A5	Q01650	507 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	LRFN4	Q6PJG9	635 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	FAM35A	Q86V20	835 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	KISS1R	Q969F8	398 aa	Predicted RBP	4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	DHRS4	Q9BTZ2	278 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	RUSC1	Q9BVN2	902 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	LRP2BP	Q9P2M1	347 aa		4.79	□□□□□ -1.64
SREK1-208	ENST00000520580	IQCA1L	A6NCM1	817 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	SOBP	A7XYQ1	873 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	GFRA2	O00451	464 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	KIF3B	O15066	747 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	HOXD8	P13378	290 aa	Predicted RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	IKBKE	Q14164	716 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	GDF6	Q6KF10	455 aa	Predicted RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	TXNDC11	Q6PKC3	985 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	WDR66	Q8TBY9	1149 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	ZFP42	Q96MM3	310 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	DNAJB12	Q9NXW2	375 aa	Known RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	SOX13	Q9UN79	622 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	MAPRE3	Q9UPY8	281 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	CSAD	Q9Y600	493 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	DCDC2C	A8MYV0	355 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	AGRP	O00253	132 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	PRPF3	O43395	683 aa	Known RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	PLIN1	O60240	522 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	EPHA1	P21709	976 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	NEK2	P51955	445 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	SCARF1	Q14162	830 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	MLEC	Q14165	292 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	LONRF2	Q1L5Z9	754 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	TRIM67	Q6ZTA4	783 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	DDX46	Q7L014	1031 aa	Known RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	CHPF	Q8IZ52	775 aa		4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	RNF166	Q96A37	237 aa	Predicted RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	IPO9	Q96P70	1041 aa	Known RBP	4.78	□□□□□ -1.64
SREK1-208	ENST00000520580	PRR36	Q9H6K5	1346 aa		4.77	□□□□□ -1.65
SREK1-208	ENST00000520580	FAM83G	A6ND36	823 aa		4.77	□□□□□ -1.65
SREK1-208	ENST00000520580	CHURC1-FNTB	B4DL54	471 aa		4.77	□□□□□ -1.65
SREK1-208	ENST00000520580	PLD2	O14939	933 aa		4.77	□□□□□ -1.65
SREK1-208	ENST00000520580	CAND2	O75155	1236 aa		4.77	□□□□□ -1.65
SREK1-208	ENST00000520580	EYA4	O95677	639 aa		4.77	□□□□□ -1.65
SREK1-208	ENST00000520580	NEK4	P51957	841 aa		4.77	□□□□□ -1.65

Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms