RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 MINDY4BA8MYZ0 360 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 TARSP26639 723 aaKnown RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 NASPP49321 788 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 LIG3P49916 1009 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 NRLP54845 237 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 PPP2R3AQ06190 1150 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 SNAP47Q5SQN1 464 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ZNF746Q6NUN9 644 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ZNF775Q96BV0 537 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 TCF12Q99081 682 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 BHLHE41Q9C0J9 482 aaPredicted RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 NUCKS1Q9H1E3 243 aaKnown RBP6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ATP13A2Q9NQ11 1180 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ADAMTS1Q9UHI8 967 aa6.65□□□□□ -1.34
HMGB1P23-201ENST00000518743 ZFYVE9O95405 1425 aa6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 ARHGAP31Q2M1Z3 1444 aa6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 EIF2AK4Q9P2K8 1649 aaKnown RBP6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 GCC2Q8IWJ2 1684 aa6.65□□□□□ -1.35
HMGB1P23-201ENST00000518743 NRAPQ86VF7 1730 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 XRN1Q8IZH2 1706 aaKnown RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 C11orf95C9JLR9 678 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAN1A2O60476 641 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 CYP2E1P05181 493 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 BMP1P13497 986 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 NFKB1P19838 968 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 TNP2Q05952 138 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPEM2Q0P670 501 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 APOBRQ0VD83 1088 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 KRT25Q7Z3Z0 450 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 TMEM102Q8N9M5 508 aaPredicted RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 PHC3Q8NDX5 983 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 DDX54Q8TDD1 881 aaKnown RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 RHOVQ96L33 236 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 EFR3BQ9Y2G0 817 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 LRPPRCP42704 1394 aaKnown RBP6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 MBD5Q9P267 1494 aa6.64□□□□□ -1.35
HMGB1P23-201ENST00000518743 RGPD3A6NKT7 1758 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 FAM177BA6PVY3 158 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 K7ELQ4 463 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 TSPY4P0CV99 314 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 TSPY10P0CW01 314 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 MAPTP10636 758 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 HSD3B2P26439 372 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 HNRNPUQ00839 825 aaKnown RBP eCLIP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SFSWAPQ12872 951 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPATA31A5Q5VU36 1347 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SCARA3Q6AZY7 606 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 TPTE2Q6XPS3 522 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 RIPOR1Q6ZS17 1223 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 DHX32Q7L7V1 743 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 RGPD4Q7Z3J3 1758 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 SPATA31A7Q8IWB4 1347 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 ARHGEF28Q8N1W1 1705 aaKnown RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 OR6P1Q8NGX9 317 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZKSCAN3Q9BRR0 538 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 PRDM10Q9NQV6 1147 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 LATS2Q9NRM7 1088 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 DZANK1Q9NVP4 752 aa6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 ATXN7L1Q9ULK2 861 aaPredicted RBP6.63□□□□□ -1.35
HMGB1P23-201ENST00000518743 DCDC2BA2VCK2 349 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 FOXN1O15353 648 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 GREM1O60565 184 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 IMPDH2P12268 514 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 SNRPBP14678 240 aaKnown RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 RGS19P49795 217 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 GPLD1P80108 840 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 CAMK2GQ13555 558 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 BMS1Q14692 1282 aaKnown RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 LRRC14Q15048 493 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLC15A2Q16348 729 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TAF7LQ5H9L4 462 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TTBK2Q6IQ55 1244 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 FOXR1Q6PIV2 292 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 AGMOQ6ZNB7 445 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TRIM42Q8IWZ5 723 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 CEP120Q8N960 986 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 NKD1Q969G9 470 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 EAF1Q96JC9 268 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZFP42Q96MM3 310 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 NECAB3Q96P71 396 aaPredicted RBP6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZNF408Q9H9D4 720 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TMEM39AQ9NV64 488 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 DNMT3LQ9UJW3 386 aa6.62□□□□□ -1.35
HMGB1P23-201ENST00000518743 TULP4Q9NRJ4 1543 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 TNRC18O15417 2968 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 KANK1Q14678 1352 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 A0A096LPE4 126 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 A0A1W2PPZ6 126 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 PDE2AO00408 941 aaPredicted RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SMNDC1O75940 238 aaKnown RBP eCLIP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GHRHP01286 108 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 FSTL1Q12841 308 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SERINC3Q13530 473 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 CWF19L2Q2TBE0 894 aaKnown RBP6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 PCNX4Q63HM2 1172 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 FBXL19Q6PCT2 694 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 SLITRK4Q8IW52 837 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 TRIM22Q8IYM9 498 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 GOLM1Q8NBJ4 401 aa6.61□□□□□ -1.35
HMGB1P23-201ENST00000518743 ZCRB1Q8TBF4 217 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms