RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 GPCPD1Q9NPB8 672 aa14.79□□□□□ -0.04
TCOF1-213ENST00000514442 RMND1Q9NWS8 449 aa14.79□□□□□ -0.04
TCOF1-213ENST00000514442 ARHGAP6O43182 974 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 JAK2O60674 1132 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 FANCCQ00597 558 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 ATRIPQ8WXE1 791 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 PHKBQ93100 1093 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 FEZ2Q9UHY8 353 aaPredicted RBP14.78□□□□□ -0.04
TCOF1-213ENST00000514442 ZNF335Q9H4Z2 1342 aaPredicted RBP14.78□□□□□ -0.04
TCOF1-213ENST00000514442 LOC102724159A0A0B4J2E5 919 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 GOLGA6L10A0A0M3HER8 536 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 NEBLO76041 1014 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 KCNQ4P56696 695 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 PWP2Q15269 919 aaKnown RBP14.78□□□□□ -0.04
TCOF1-213ENST00000514442 ATL3Q6DD88 541 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 CDC37L1Q7L3B6 337 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 VPS36Q86VN1 386 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 ERMNQ8TAM6 284 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 MTMR6Q9Y217 621 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 PARP1P09874 1014 aaKnown RBP14.78□□□□□ -0.04
TCOF1-213ENST00000514442 POLD1P28340 1107 aa14.78□□□□□ -0.04
TCOF1-213ENST00000514442 PUS3Q9BZE2 481 aaKnown RBP14.78□□□□□ -0.04
TCOF1-213ENST00000514442 ARHGAP25P42331 645 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 TTC6Q86TZ1 520 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 TMEM87BQ96K49 555 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 TLR7Q9NYK1 1049 aaKnown RBP14.77□□□□□ -0.04
TCOF1-213ENST00000514442 ZDHHC9Q9Y397 364 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 POLR1AO95602 1720 aaPredicted RBP14.77□□□□□ -0.04
TCOF1-213ENST00000514442 FAM114A1Q8IWE2 563 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 FAM71BQ8TC56 605 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 PDE11AQ9HCR9 933 aa14.77□□□□□ -0.04
TCOF1-213ENST00000514442 CPSF2Q9P2I0 782 aaKnown RBP14.77□□□□□ -0.04
TCOF1-213ENST00000514442 V9GY48 417 aaPredicted RBP14.77□□□□□ -0.04
TCOF1-213ENST00000514442 A0A087WUV0 522 aaPredicted RBP14.77□□□□□ -0.05
TCOF1-213ENST00000514442 GOLGA6CA6NDK9 693 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 A6NNZ2 444 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 ZNF853P0CG23 659 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 GOLGA6DP0CG33 693 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 GYG1P46976 350 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 TUBB8Q3ZCM7 444 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 ZBTB38Q8NAP3 1195 aaPredicted RBP14.77□□□□□ -0.05
TCOF1-213ENST00000514442 STK32BQ9NY57 414 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 GOLGA6AQ9NYA3 693 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 hCG_1642624A0A1W2PR95 340 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 VWA3AA6NCI4 1184 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 E2F4Q16254 413 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 CARD10Q9BWT7 1032 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 KCNF1Q9H3M0 494 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 JADE2Q9NQC1 790 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 ZBTB1Q9Y2K1 713 aa14.77□□□□□ -0.05
TCOF1-213ENST00000514442 RNF17Q9BXT8 1623 aaKnown RBP14.77□□□□□ -0.05
TCOF1-213ENST00000514442 PHLPP2Q6ZVD8 1323 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 E7EWF7 191 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 ATP2C2O75185 946 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 ECM2O94769 699 aaPredicted RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 APBA3O96018 575 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 MYL5Q02045 173 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 DPP8Q6V1X1 898 aaPredicted RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 MAATS1Q7Z4T9 603 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 CCDC50Q8IVM0 306 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 MAPKAPK5Q8IW41 473 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 XPO4Q9C0E2 1151 aaKnown RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 GREM2Q9H772 168 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 CDK12Q9NYV4 1490 aaPredicted RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 SPDYE3A6NKU9 549 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 NDUFAB1O14561 156 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 TRIM21P19474 475 aaKnown RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 LIG3P49916 1009 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 PLS1Q14651 629 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 RABGGTAQ92696 567 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 UNC13BO14795 1591 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 USO1O60763 962 aaKnown RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 NBPF14Q5TI25 921 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 UNC5CLQ8IV45 518 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 ZKSCAN7Q9P0L1 754 aaPredicted RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 CDC42BPBQ9Y5S2 1711 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 LOC102724428A0A0B4J2F2 783 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 POTEJP0CG39 1038 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 BCAMP50895 628 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 SIK1P57059 783 aa14.76□□□□□ -0.05
TCOF1-213ENST00000514442 RPS8P62241 208 aaKnown RBP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 BCCIPQ9P287 314 aaKnown RBP eCLIP14.76□□□□□ -0.05
TCOF1-213ENST00000514442 ZEB2O60315 1214 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 NR1I2O75469 434 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 LETM2Q2VYF4 491 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 CTAGE1Q96RT6 745 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 LRRC27Q9C0I9 530 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 SPHKAPQ2M3C7 1700 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 WDR17Q8IZU2 1322 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 ARHGAP31Q2M1Z3 1444 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 MAP3K15Q6ZN16 1313 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 CRKLP46109 303 aaKnown RBP14.75□□□□□ -0.05
TCOF1-213ENST00000514442 SPECC1Q5M775 1068 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 MMS22LQ6ZRQ5 1243 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 KRI1Q8N9T8 703 aaKnown RBP14.75□□□□□ -0.05
TCOF1-213ENST00000514442 MED4Q9NPJ6 270 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 GJA3Q9Y6H8 435 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 GLI2P10070 1586 aa14.75□□□□□ -0.05
TCOF1-213ENST00000514442 PCCAP05165 728 aaPredicted RBP14.75□□□□□ -0.05
TCOF1-213ENST00000514442 WDR66Q8TBY9 1149 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms