RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 CMTR1Q8N1G2 835 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 SPATA5Q8NB90 893 aa9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 DDX17Q92841 729 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 NIP7Q9Y221 180 aaKnown RBP eCLIP9.51□□□□□ -0.89
LIMCH1-216ENST00000512820 hCG_1642624A0A1W2PR95 340 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 PDE8AO60658 829 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 PRDM1O75626 825 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 KRT9P35527 623 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 GNAQP50148 359 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 TTC38Q5R3I4 469 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 PIK3AP1Q6ZUJ8 805 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 MMRN2Q9H8L6 949 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 TAB2Q9NYJ8 693 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 SALL3Q9BXA9 1300 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 USP27XA6NNY8 438 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 HSF2BPO75031 334 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 PPP6R2O75170 966 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 CIAO1O76071 339 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 PDE6AP16499 860 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 TRIM14Q14142 442 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 TSGA10IPQ3SY00 556 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 VPS54Q9P1Q0 977 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 CD163L1Q9NR16 1453 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 PAK1Q13153 545 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 LONRF3Q496Y0 759 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 DLC1Q96QB1 1528 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 STX10O60499 249 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 TSPY3P0CV98 308 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 TSPY8P0CW00 308 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 ATP1A3P13637 1013 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 APOA5Q6Q788 366 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 FCHSD1Q86WN1 690 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 IFNL3Q8IZI9 196 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 SLF1Q9BQI6 1058 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 KIDINS220Q9ULH0 1771 aa9.5□□□□□ -0.89
LIMCH1-216ENST00000512820 MROH2AA6NES4 1674 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 NUTM2BA6NNL0 878 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 NUTM2EB1AL46 878 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 DDX41Q9UJV9 622 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 PIK3C2BO00750 1634 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 USP32Q8NFA0 1604 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 BAG3O95817 575 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 BRD3Q15059 726 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 RNF187Q5TA31 235 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 SPTY2D1Q68D10 685 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 SMARCC2Q8TAQ2 1214 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 FERMT2Q96AC1 680 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 GJB4Q9NTQ9 266 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 WWC3Q9ULE0 1092 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 OVOS2A0A0J9YW53 1432 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 OVOS2Q6IE36 1432 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 BICDL2A1A5D9 508 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 MACROD2A1Z1Q3 448 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 ZPR1O75312 459 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 VPS36Q86VN1 386 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 TRIML1Q8N9V2 468 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 PUS7LQ9H0K6 701 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 BLZF1Q9H2G9 400 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 CDC42BPGQ6DT37 1551 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 NRKQ7Z2Y5 1582 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 SEC31AO94979 1220 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 TBC1D8BQ0IIM8 1120 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 MAATS1Q7Z4T9 603 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 ZNF654Q8IZM8 581 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 FMR1NBQ8N0W7 255 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 AIFM3Q96NN9 605 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 RASSF4Q9H2L5 321 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 BCCIPQ9P287 314 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 FBXO3Q9UK99 471 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 CTDP1Q9Y5B0 961 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 PHLPP2Q6ZVD8 1323 aa9.49□□□□□ -0.89
LIMCH1-216ENST00000512820 ERVV-2B6SEH9 535 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 LDHCP07864 332 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 ATP6V1AP38606 617 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 CLCN6P51797 869 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 NAPAP54920 295 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 PPP2R5BQ15173 497 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 ZFYVE27Q5T4F4 411 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 PI16Q6UXB8 463 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 MICALCLQ6ZW33 695 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 UBA5Q9GZZ9 404 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 MCM9Q9NXL9 1143 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 MPHOSPH10O00566 681 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 NOP2P46087 812 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 NEK11Q8NG66 645 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 DEPDC5O75140 1603 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 TMCO5BA8MYB1 307 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 OPA1O60313 960 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 PCCAP05165 728 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 ZNF76P36508 570 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 PLCD1P51178 756 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 UBE3CQ15386 1083 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 DHX40Q8IX18 779 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 FANCBQ8NB91 859 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 TAF6LQ9Y6J9 622 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 TAX1BP1Q86VP1 789 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 VSTM4Q8IW00 320 aa9.48□□□□□ -0.89
LIMCH1-216ENST00000512820 ZBTB38Q8NAP3 1195 aaPredicted RBP9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms