RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 MVPQ14764 893 aaKnown RBP9.87□□□□□ -0.83
SCN1A-207ENST00000507401 THSD4Q6ZMP0 1018 aa9.87□□□□□ -0.83
SCN1A-207ENST00000507401 TNNQ9UQP3 1299 aa9.87□□□□□ -0.83
SCN1A-207ENST00000507401 SSC5DA1L4H1 1573 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 PHKA1P46020 1223 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 SPTY2D1Q68D10 685 aaPredicted RBP9.86□□□□□ -0.83
SCN1A-207ENST00000507401 SLF2Q8IX21 1173 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 FTSJ3Q8IY81 847 aaKnown RBP9.86□□□□□ -0.83
SCN1A-207ENST00000507401 SSH3Q8TE77 659 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 FAM151AQ8WW52 585 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 XAGE2Q96GT9 111 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 WNK4Q96J92 1243 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 TMEM39BQ9GZU3 492 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 GPR108Q9NPR9 543 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 FZD1Q9UP38 647 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 MYH13Q9UKX3 1938 aa9.86□□□□□ -0.83
SCN1A-207ENST00000507401 PNMA6EA0A0J9YXQ4 647 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 TESPA1A2RU30 521 aaPredicted RBP9.85□□□□□ -0.83
SCN1A-207ENST00000507401 IGSF3O75054 1194 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 ADORA1P30542 326 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 MLLT3P42568 568 aaPredicted RBP9.85□□□□□ -0.83
SCN1A-207ENST00000507401 DGKZQ13574 1117 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 OTUD7BQ6GQQ9 843 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.85□□□□□ -0.83
SCN1A-207ENST00000507401 CCDC136Q96JN2 1154 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 CLMNQ96JQ2 1002 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 NEUROD6Q96NK8 337 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 MCOLN1Q9GZU1 580 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 CDHR5Q9HBB8 845 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 FAM198AQ9UFP1 575 aa9.85□□□□□ -0.83
SCN1A-207ENST00000507401 GPR25O00155 361 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 TBC1D8O95759 1140 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 MAP4K4O95819 1239 aaPredicted RBP9.84□□□□□ -0.83
SCN1A-207ENST00000507401 PRDX5P30044 214 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 CACNB3P54284 484 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 RASGRF1Q13972 1273 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 DIXDC1Q155Q3 683 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 PKN2Q16513 984 aaKnown RBP9.84□□□□□ -0.83
SCN1A-207ENST00000507401 GORABQ5T7V8 394 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 DCAF15Q66K64 600 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 CDC42EP5Q6NZY7 148 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 LAPTM4BQ86VI4 370 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.84□□□□□ -0.83
SCN1A-207ENST00000507401 WNT2BQ93097 391 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 USP40Q9NVE5 1235 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 DAGLAQ9Y4D2 1042 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 CSADQ9Y600 493 aa9.84□□□□□ -0.83
SCN1A-207ENST00000507401 RPAP1Q9BWH6 1393 aaPredicted RBP9.84□□□□□ -0.83
SCN1A-207ENST00000507401 LAMB1P07942 1786 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 SURF6O75683 361 aaKnown RBP9.83□□□□□ -0.84
SCN1A-207ENST00000507401 UQCRFS1P1P0C7P4 283 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 RLBP1P12271 317 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 CTU1Q7Z7A3 348 aaKnown RBP9.83□□□□□ -0.84
SCN1A-207ENST00000507401 ITPRIPQ8IWB1 547 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 OPTNQ96CV9 577 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 DDRGK1Q96HY6 314 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 IDI2Q9BXS1 227 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 ELP3Q9H9T3 547 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 NPDC1Q9NQX5 325 aaPredicted RBP9.83□□□□□ -0.84
SCN1A-207ENST00000507401 HMG20BQ9P0W2 317 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 ABCF2Q9UG63 623 aa9.83□□□□□ -0.84
SCN1A-207ENST00000507401 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.83□□□□□ -0.84
SCN1A-207ENST00000507401 GAKO14976 1311 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 GPR75-ASB3A0A0A6YYF3 556 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 SPDYE5A6NIY4 337 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 C3orf80F5H4A9 247 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 FKTNO75072 461 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ENTPD3O75355 529 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 LDHCP07864 332 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ARID4AP29374 1257 aaPredicted RBP9.82□□□□□ -0.84
SCN1A-207ENST00000507401 GJA5P36382 358 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 RGS19P49795 217 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 GTF2A2P52657 109 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 GSTO1P78417 241 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 VGLL4Q14135 290 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ERO1BQ86YB8 467 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 SPATA5Q8NB90 893 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ZNF296Q8WUU4 475 aaPredicted RBP9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ZNF512BQ96KM6 892 aaPredicted RBP9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ZNF341Q9BYN7 854 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 ZNF112Q9UJU3 913 aa9.82□□□□□ -0.84
SCN1A-207ENST00000507401 CCDC85CA6NKD9 419 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 IGF2BP3O00425 579 aaKnown RBP eCLIP9.81□□□□□ -0.84
SCN1A-207ENST00000507401 MAP3K10Q02779 954 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 PPATQ06203 517 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 NFIAQ12857 509 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 TNNI3KQ59H18 835 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 CCDC158Q5M9N0 1113 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 DZIP1Q86YF9 867 aaKnown RBP9.81□□□□□ -0.84
SCN1A-207ENST00000507401 PTPN18Q99952 460 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 CHMP4BQ9H444 224 aaKnown RBP9.81□□□□□ -0.84
SCN1A-207ENST00000507401 ZCCHC17Q9NP64 241 aaKnown RBP9.81□□□□□ -0.84
SCN1A-207ENST00000507401 SEPT9Q9UHD8 586 aaPredicted RBP9.81□□□□□ -0.84
SCN1A-207ENST00000507401 FPGT-TNNI3KV9GXZ4 949 aa9.81□□□□□ -0.84
SCN1A-207ENST00000507401 MYH2Q9UKX2 1941 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 PTPN5P54829 565 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 PRSS12P56730 875 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 MECOMQ03112 1051 aa9.8□□□□□ -0.84
SCN1A-207ENST00000507401 OS9Q13438 667 aaPredicted RBP9.8□□□□□ -0.84
SCN1A-207ENST00000507401 MIGA2Q7L4E1 593 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms