RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 NOGQ13253 232 aa10.1□□□□□ -0.79
PDGFC-205ENST00000506880 C12orf60Q5U649 245 aa10.1□□□□□ -0.79
PDGFC-205ENST00000506880 CST9Q5W186 159 aa10.1□□□□□ -0.79
PDGFC-205ENST00000506880 TSHZ3Q63HK5 1081 aa10.1□□□□□ -0.79
PDGFC-205ENST00000506880 TATDN1Q6P1N9 297 aa10.1□□□□□ -0.79
PDGFC-205ENST00000506880 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.1□□□□□ -0.79
PDGFC-205ENST00000506880 EDC3Q96F86 508 aaKnown RBP10.1□□□□□ -0.79
PDGFC-205ENST00000506880 RNF41Q9H4P4 317 aaPredicted RBP10.1□□□□□ -0.79
PDGFC-205ENST00000506880 SLC4A4Q9Y6R1 1079 aa10.1□□□□□ -0.79
PDGFC-205ENST00000506880 GSG1L2A8MUP6 293 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 ADM5C9JUS6 153 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 SGSM2O43147 1006 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 CA12O43570 354 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 REC8O95072 547 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 POLR3DP05423 398 aaPredicted RBP10.09□□□□□ -0.79
PDGFC-205ENST00000506880 PPATQ06203 517 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 PDE4BQ07343 736 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 CCDC178Q5BJE1 867 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 KIAA1211Q6ZU35 1233 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 ERO1BQ86YB8 467 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 LCORLQ8N3X6 602 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 MIGA1Q8NAN2 632 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 MTA3Q9BTC8 594 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 TMEM39BQ9GZU3 492 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 NAPBQ9H115 298 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 DDX4Q9NQI0 724 aaKnown RBP10.09□□□□□ -0.79
PDGFC-205ENST00000506880 MCM9Q9NXL9 1143 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 NDUFB9Q9Y6M9 179 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 SIPA1L1O43166 1804 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 ATAD5Q96QE3 1844 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 SSC5DA1L4H1 1573 aa10.09□□□□□ -0.79
PDGFC-205ENST00000506880 ASTN2O75129 1339 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-205ENST00000506880 OTOFQ9HC10 1997 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 ABCB7O75027 752 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 USP2O75604 605 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-205ENST00000506880 FGRP09769 529 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 HSPD1P10809 573 aaKnown RBP10.08□□□□□ -0.8
PDGFC-205ENST00000506880 TDO2P48775 406 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 HUNKP57058 714 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 DEFB115Q30KQ5 88 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 NBPF12Q5TAG4 269 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-205ENST00000506880 RGMBQ6NW40 437 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 C16orf86Q6ZW13 317 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 IFNL3Q8IZI9 196 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 CRACR2BQ8N4Y2 399 aaPredicted RBP10.08□□□□□ -0.8
PDGFC-205ENST00000506880 CNNM2Q9H8M5 875 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 ARMT1Q9H993 441 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.08□□□□□ -0.8
PDGFC-205ENST00000506880 AS3MTQ9HBK9 375 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 PCDHAC2Q9Y5I4 1007 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 PLIN4Q96Q06 1357 aa10.08□□□□□ -0.8
PDGFC-205ENST00000506880 A0A0D9SFI3 127 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 DDTLA6NHG4 134 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-205ENST00000506880 MANSC4A6NHS7 340 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-205ENST00000506880 SPDYE5A6NIY4 337 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 PHF20L1A8MW92 1017 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 CXCL11O14625 94 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 ORC4O43929 436 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 ALDH1A1P00352 501 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 CAP2P40123 477 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 DYNLL1P63167 89 aaKnown RBP10.07□□□□□ -0.8
PDGFC-205ENST00000506880 SREBF2Q12772 1141 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 TCP10Q12799 353 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 NMIQ13287 307 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-205ENST00000506880 PPIL2Q13356 520 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 PICALMQ13492 652 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 RNF20Q5VTR2 975 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 MAPKAPK5Q8IW41 473 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 SCYL3Q8IZE3 742 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 SLC10A4Q96EP9 437 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 WDR18Q9BV38 432 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 SH2D4AQ9H788 454 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 CABP5Q9NP86 173 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 PICK1Q9NRD5 415 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 SLC45A1Q9Y2W3 748 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 PTPRFP10586 1907 aa10.07□□□□□ -0.8
PDGFC-205ENST00000506880 GREB1LQ9C091 1923 aaPredicted RBP10.07□□□□□ -0.8
PDGFC-205ENST00000506880 C19orf81C9J6K1 198 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 USP17L12C9JPN9 530 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 USP17L21D6R901 530 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 M0R2C6 588 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 TRAF5O00463 557 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 APPP05067 770 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 SLC10A3P09131 477 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 TTLL12Q14166 644 aaPredicted RBP10.06□□□□□ -0.8
PDGFC-205ENST00000506880 IMMTQ16891 758 aaKnown RBP10.06□□□□□ -0.8
PDGFC-205ENST00000506880 NOM1Q5C9Z4 860 aaKnown RBP10.06□□□□□ -0.8
PDGFC-205ENST00000506880 OTUD7BQ6GQQ9 843 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 CTR9Q6PD62 1173 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 CWC27Q6UX04 472 aaKnown RBP10.06□□□□□ -0.8
PDGFC-205ENST00000506880 TMEM179Q6ZVK1 233 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 SH3BP5LQ7L8J4 393 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 MAP4K1Q92918 833 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 WRNIP1Q96S55 665 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 ESYT1Q9BSJ8 1104 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 CFHR5Q9BXR6 569 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 BCL11AQ9H165 835 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 PALD1Q9ULE6 856 aa10.06□□□□□ -0.8
PDGFC-205ENST00000506880 ABT1Q9ULW3 272 aaKnown RBP10.06□□□□□ -0.8
PDGFC-205ENST00000506880 ANGEL1Q9UNK9 670 aaKnown RBP10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms