RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 KIF12Q96FN5 646 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 FAM227BQ96M60 508 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 DCP1AQ9NPI6 582 aaPredicted RBP14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 DIAPH3Q9NSV4 1193 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 SLC4A4Q9Y6R1 1079 aa14.29□□□□□ -0.12
PDLIM5-208ENST00000504489 PRKAB2O43741 272 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 PTPRFP10586 1907 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 MAP3K11Q16584 847 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 DCAF15Q66K64 600 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 GIMAP6Q6P9H5 292 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 ARMC9Q7Z3E5 817 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 CSRNP1Q96S65 589 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 PI4KBQ9UBF8 816 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 TLL2Q9Y6L7 1015 aa14.28□□□□□ -0.12
PDLIM5-208ENST00000504489 GSG1L2A8MUP6 293 aa14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 PATL2C9JE40 543 aaKnown RBP14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 TBC1D12O60347 775 aa14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 USP2O75604 605 aaPredicted RBP14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 CHMLP26374 656 aa14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 CWC27Q6UX04 472 aaKnown RBP14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 SAPCD2Q86UD0 394 aa14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 METTL16Q86W50 562 aaKnown RBP14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 FOXP4Q8IVH2 680 aaPredicted RBP14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 DDRGK1Q96HY6 314 aa14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 SAP30BPQ9UHR5 308 aaKnown RBP14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 PALD1Q9ULE6 856 aa14.27□□□□□ -0.13
PDLIM5-208ENST00000504489 UNCXA6NJT0 531 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 HLA-DOAP06340 250 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 IREB2P48200 963 aaKnown RBP14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 MFAP1P55081 439 aaKnown RBP14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 TTLL12Q14166 644 aaPredicted RBP14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 LDLRAD1Q5T700 205 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 CCDC129Q6ZRS4 1044 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 TTC6Q86TZ1 520 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 HHIPL1Q96JK4 782 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 ZNF341Q9BYN7 854 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 MCM9Q9NXL9 1143 aa14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 HERC5Q9UII4 1024 aaKnown RBP14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 ANGEL1Q9UNK9 670 aaKnown RBP14.26□□□□□ -0.13
PDLIM5-208ENST00000504489 CCDC171Q6TFL3 1326 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 UBE2Q2LH0YL09 131 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 PRKG1Q13976 671 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 MOB2Q70IA6 237 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 MIGA2Q7L4E1 593 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 RUFY2Q8WXA3 655 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 KLRG1Q96E93 195 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 EHD4Q9H223 541 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 ZNF112Q9UJU3 913 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 TAOK2Q9UL54 1235 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 ABT1Q9ULW3 272 aaKnown RBP14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 GTF3C3Q9Y5Q9 886 aa14.25□□□□□ -0.13
PDLIM5-208ENST00000504489 RAD50Q92878 1312 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 MYH4Q9Y623 1939 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 RASSF10A6NK89 507 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 USP17L12C9JPN9 530 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 USP17L21D6R901 530 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 FOXP2O15409 715 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 APPP05067 770 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 POLR3DP05423 398 aaPredicted RBP14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 HUNKP57058 714 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 ALX1Q15699 326 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 SBK1Q52WX2 424 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 C12orf60Q5U649 245 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 ZNF589Q86UQ0 364 aaPredicted RBP14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 IFNL3Q8IZI9 196 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.24□□□□□ -0.131e-6■■■□□ 17.2
PDLIM5-208ENST00000504489 NACAP1Q9BZK3 213 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 EPB41L4AQ9HCS5 686 aaPredicted RBP14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 FZD1Q9UP38 647 aa14.24□□□□□ -0.13
PDLIM5-208ENST00000504489 PHF20L1A8MW92 1017 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 MAP3K13O43283 966 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 PLCD1P51178 756 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 MAP3K9P80192 1104 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 DEFB115Q30KQ5 88 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 CTR9Q6PD62 1173 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 AMOTL1Q8IY63 956 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 ANKRD13AQ8IZ07 590 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 ARPP21Q9UBL0 812 aaPredicted RBP14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 SERPINB13Q9UIV8 391 aa14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 GREB1LQ9C091 1923 aaPredicted RBP14.23□□□□□ -0.13
PDLIM5-208ENST00000504489 ZMYM6O95789 1325 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 SGSM2O43147 1006 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 SLURP2P0DP57 97 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 HSPD1P10809 573 aaKnown RBP14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 TDO2P48775 406 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 HTRA3P83110 453 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 GABPAQ06546 454 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 SLC4A8Q2Y0W8 1093 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 VPS53Q5VIR6 699 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 CRACR2BQ8N4Y2 399 aaPredicted RBP14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 WRNIP1Q96S55 665 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 NAPBQ9H115 298 aa14.22□□□□□ -0.13
PDLIM5-208ENST00000504489 FAM196BA6NMK8 535 aa14.21□□□□□ -0.13
PDLIM5-208ENST00000504489 CDC45O75419 566 aa14.21□□□□□ -0.13
PDLIM5-208ENST00000504489 CYP2D6P10635 497 aa14.21□□□□□ -0.13
PDLIM5-208ENST00000504489 RGMBQ6NW40 437 aa14.21□□□□□ -0.13
PDLIM5-208ENST00000504489 DSCC1Q9BVC3 393 aa14.21□□□□□ -0.13
PDLIM5-208ENST00000504489 TRIM34Q9BYJ4 488 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms