RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 IKBKBO14920 756 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SMC2O95347 1197 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ISM2Q6H9L7 571 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 TMC6Q7Z403 805 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 IFNL3Q8IZI9 196 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ARHGEF1Q92888 912 aaKnown RBP18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 AIDAQ96BJ3 306 aa18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.57■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 GOLGA8AA7E2F4 631 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 IARSP41252 1262 aaKnown RBP18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CTDSPL2Q05D32 466 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 TMEM67Q5HYA8 995 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 RESP18Q5W5W9 173 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CPLX2Q6PUV4 134 aaKnown RBP18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ZNF34Q8IZ26 560 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ZSWIM5Q9P217 1185 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 TIAM2Q8IVF5 1701 aa18.56■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 MROH5Q6ZUA9 1318 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ERVV-1B6SEH8 477 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 E4F1Q66K89 784 aaPredicted RBP18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CCDC24Q8N4L8 307 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SPATA5Q8NB90 893 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CLIC6Q96NY7 704 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 RTCBQ9Y3I0 505 aaKnown RBP18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 UBR3Q6ZT12 1888 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 LIFRP42702 1097 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SLC27A3Q5K4L6 730 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 GTPBP4Q9BZE4 634 aaKnown RBP18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 PRDM10Q9NQV6 1147 aa18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.55■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 STK36Q9NRP7 1315 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SNAP23O00161 211 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 MBD4O95243 580 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 IL6STP40189 918 aaPredicted RBP18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 FANCCQ00597 558 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 RASGRF1Q13972 1273 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 MSL1Q68DK7 614 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 NFXL1Q6ZNB6 911 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 MAGEB6Q8N7X4 407 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 JMYQ8N9B5 988 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CCDC150Q8NCX0 1101 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ATP1A3P13637 1013 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 LMOD1P29536 600 aaPredicted RBP18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 PNOCQ13519 176 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ARMT1Q9H993 441 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 TAOK2Q9UL54 1235 aa18.54■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CNTNAP4Q9C0A0 1308 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SPDYE4A6NLX3 237 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 GSG1L2A8MUP6 293 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 TPM4P67936 248 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 METTL16Q86W50 562 aaKnown RBP18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 NID2Q14112 1375 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 BCORQ6W2J9 1755 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 IFIT3O14879 490 aaKnown RBP18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 CUTAO60888 179 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 RPS6KA4O75676 772 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 FMNL1O95466 1100 aaPredicted RBP18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ZSCAN20P17040 1043 aaPredicted RBP18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 GNL2Q13823 731 aaKnown RBP18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 FOXP4Q8IVH2 680 aaPredicted RBP18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SLC26A6Q9BXS9 759 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 NAPBQ9H115 298 aa18.53■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 GUCY1A2P33402 732 aa18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SSRP1Q08945 709 aaKnown RBP18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 LONRF3Q496Y0 759 aa18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 AKNAD1Q5T1N1 836 aa18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 DPF2Q92785 391 aa18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 ZNF215Q9UL58 517 aaPredicted RBP18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 SLC12A7Q9Y666 1083 aa18.52■□□□□ 0.56
MSH5-SAPCD1-208ENST00000498473 PSDA5PKW4 1024 aaPredicted RBP18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 PRKAB2O43741 272 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SLC5A1P13866 664 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 IFNAR1P17181 557 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KCNJ6P48051 423 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 MAP3K12Q12852 859 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TRIM29Q14134 588 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 AKT1S1Q96B36 256 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 PPP1R13BQ96KQ4 1090 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CAMTA2O94983 1202 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SFPQP23246 707 aaKnown RBP eCLIP18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 RFC4P35249 363 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TOB1P50616 345 aaPredicted RBP18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TRAPPC3LQ5T215 181 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SUSD4Q5VX71 490 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KRBA2Q6ZNG9 492 aa18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 COL23A1Q86Y22 540 aaPredicted RBP18.51■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 TAF3Q5VWG9 929 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 STK11IPQ8N1F8 1099 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 KIF18AQ8NI77 898 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CNNM2Q9H8M5 875 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 SEC31BQ9NQW1 1179 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 CGNQ9P2M7 1197 aaKnown RBP18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 ZNF831Q5JPB2 1677 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 RREB1Q92766 1687 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 BTBD18B2RXH4 712 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 MDM2Q00987 491 aaPredicted RBP18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 MYL5Q02045 173 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 NOSTRINQ8IVI9 506 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 LCORLQ8N3X6 602 aa18.5■□□□□ 0.55
MSH5-SAPCD1-208ENST00000498473 FEZ1Q99689 392 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms