RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 NBPF7P0C2Y1 421 aaPredicted RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 SKOR2Q2VWA4 1001 aaPredicted RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 LONRF3Q496Y0 759 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 KDM4CQ9H3R0 1056 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 SMC4Q9NTJ3 1288 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 CPSF1Q10570 1443 aaKnown RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 COL5A2P05997 1499 aaPredicted RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 MAP1BP46821 2468 aaKnown RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 CREBBPQ92793 2442 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 FZD9O00144 591 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 LRIT3Q3SXY7 679 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 UTP14CQ5TAP6 766 aaKnown RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 RSBN1LQ6PCB5 846 aaPredicted RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 SP8Q8IXZ3 490 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 C12orf50Q8NA57 414 aaPredicted RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 FAM210AQ96ND0 272 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 ANKRD2Q9GZV1 360 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 FAM86C1Q9NVL1 165 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 PNMA2Q9UL42 364 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 TRPC6Q9Y210 931 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 ATP6V0A2Q9Y487 856 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 NEXMIFQ5QGS0 1516 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 TRIM75PA6NK02 468 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 PDHXO00330 501 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 CYP27B1O15528 508 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 EIF3JO75822 258 aaKnown RBP5.94□□□□□ -1.46
USP54-216ENST00000498143 KIAA0754O94854 1291 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 DNAJB2P25686 324 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 ATICP31939 592 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 ZBTB17Q13105 803 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 FMNL3Q8IVF7 1028 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 PDCL2Q8N4E4 241 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 ATRIPQ8WXE1 791 aa5.94□□□□□ -1.46
USP54-216ENST00000498143 FAM186AA6NE01 2351 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 PRKAR2AP13861 404 aaKnown RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 LACTBP83111 547 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 KCNA1Q09470 495 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 PUM1Q14671 1186 aaKnown RBP eCLIP5.93□□□□□ -1.46
USP54-216ENST00000498143 MFSD4BQ5TF39 518 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 HDGFL1Q5TGJ6 251 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 ZNF790Q6PG37 636 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 KIAA1328Q86T90 577 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 ANKLE1Q8NAG6 615 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 TRIM63Q969Q1 353 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 MAGEC2Q9UBF1 373 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 IKBKGQ9Y6K9 419 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 PREX2Q70Z35 1606 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 PXDNQ92626 1479 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 MBD5Q9P267 1494 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 hCG_2014768A0A024R1R8 64 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 CAMTA2O94983 1202 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 NOP2P46087 812 aaKnown RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 RTP1P59025 263 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 COL9A3Q14050 684 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 ENOX2Q16206 610 aaKnown RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 OLFM4Q6UX06 510 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 MPP4Q96JB8 637 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 TCEAL9Q9UHQ7 104 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 ZHX2Q9Y6X8 837 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 APC2O95996 2303 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 PYGBP11216 843 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 ATXN3P54252 364 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 CACNB1Q02641 598 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 C1QBPQ07021 282 aaKnown RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 RASA3Q14644 834 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 ERCC4Q92889 916 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 RAI14Q9P0K7 980 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 TTF2Q9UNY4 1162 aaKnown RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 NRXN1Q9ULB1 1477 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 SCNN1DP51172 638 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 PRKCZQ05513 592 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 KCTD2Q14681 263 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 NAA30Q147X3 362 aaPredicted RBP5.93□□□□□ -1.46
USP54-216ENST00000498143 ZKSCAN2Q63HK3 967 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 ANKRD13CQ8N6S4 541 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 SH3BP1Q9Y3L3 701 aa5.93□□□□□ -1.46
USP54-216ENST00000498143 FASNP49327 2511 aaKnown RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 GNAT3A8MTJ3 354 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 PPP2R5DQ14738 602 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 RBBP5Q15291 538 aaKnown RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 HSP90B2PQ58FF3 399 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 SYAP1Q96A49 352 aaPredicted RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 C10orf71Q711Q0 1435 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 FLT4P35916 1363 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 MAST3O60307 1309 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 PXDNLA1KZ92 1463 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 UQCRHLA0A096LP55 91 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 UQCRHP07919 91 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 IGBP1P78318 339 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 NKX1-1Q15270 411 aaPredicted RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 PUS10Q3MIT2 529 aaKnown RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 KRBA2Q6ZNG9 492 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 DNAAF4Q8WXU2 420 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 TSC1Q92574 1164 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 DRC1Q96MC2 740 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 NECAB3Q96P71 396 aaPredicted RBP5.92□□□□□ -1.46
USP54-216ENST00000498143 HAUS7Q99871 368 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 PPME1Q9Y570 386 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 NOTCH2Q04721 2471 aa5.92□□□□□ -1.46
USP54-216ENST00000498143 TLR2O60603 784 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms