RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 KIAA1211Q6ZU35 1233 aa7.02□□□□□ -1.29
CSMD3-208ENST00000497026 NXPE3Q969Y0 559 aa7.02□□□□□ -1.29
CSMD3-208ENST00000497026 FAM135BQ49AJ0 1406 aa7.02□□□□□ -1.29
CSMD3-208ENST00000497026 DHX57Q6P158 1386 aaKnown RBP7.02□□□□□ -1.29
CSMD3-208ENST00000497026 ROBO2Q9HCK4 1378 aa7.02□□□□□ -1.29
CSMD3-208ENST00000497026 METTL12A8MUP2 240 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 PAX4O43316 350 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 HSPA1LP34931 641 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 EHHADHQ08426 723 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 B4GALNT3Q6L9W6 998 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 TMEM102Q8N9M5 508 aaPredicted RBP7.01□□□□□ -1.29
CSMD3-208ENST00000497026 KLHL23Q8NBE8 558 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 DCAF11Q8TEB1 546 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 ZFYVE28Q9HCC9 887 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 EGFL7Q9UHF1 273 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 BRPF3Q9ULD4 1205 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 SOX13Q9UN79 622 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 TECPR2O15040 1411 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 DCCP43146 1447 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 ADGRL3Q9HAR2 1447 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 ADGRB1O14514 1584 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 EDN3P14138 238 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 LCE1DQ5T752 114 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 PEAR1Q5VY43 1037 aaPredicted RBP7.01□□□□□ -1.29
CSMD3-208ENST00000497026 USPL1Q5W0Q7 1092 aa7.01□□□□□ -1.29
CSMD3-208ENST00000497026 COL16A1Q07092 1604 aaPredicted RBP7□□□□□ -1.29
CSMD3-208ENST00000497026 SOX1O00570 391 aaPredicted RBP7□□□□□ -1.29
CSMD3-208ENST00000497026 ARHGAP4P98171 946 aa7□□□□□ -1.29
CSMD3-208ENST00000497026 MST1RQ04912 1400 aa7□□□□□ -1.29
CSMD3-208ENST00000497026 CDC42BPGQ6DT37 1551 aa7□□□□□ -1.29
CSMD3-208ENST00000497026 Q6ZS46 218 aa7□□□□□ -1.29
CSMD3-208ENST00000497026 VN1R5Q7Z5H4 357 aa7□□□□□ -1.29
CSMD3-208ENST00000497026 LRPPRCP42704 1394 aaKnown RBP6.99□□□□□ -1.29
CSMD3-208ENST00000497026 NHSL1Q5SYE7 1610 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 PHLPP1O60346 1717 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 MED1Q15648 1581 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-208ENST00000497026 YTHDC2Q9H6S0 1430 aaKnown RBP6.99□□□□□ -1.29
CSMD3-208ENST00000497026 HYAL3O43820 417 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-208ENST00000497026 TMEM132EQ6IEE7 984 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 ERICH6Q7L0X2 663 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 BSNDQ8WZ55 320 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 C19orf44Q9H6X5 657 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 C14orf93Q9H972 538 aaKnown RBP6.99□□□□□ -1.29
CSMD3-208ENST00000497026 PLEKHH1Q9ULM0 1364 aa6.99□□□□□ -1.29
CSMD3-208ENST00000497026 AHDC1Q5TGY3 1603 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-208ENST00000497026 FSTP19883 344 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 C19orf57Q0VDD7 668 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 ORC1Q13415 861 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 IKBKEQ14164 716 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 MCTP1Q6DN14 999 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 ARMC10Q8N2F6 343 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 BCL11AQ9H165 835 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 ABCC11Q96J66 1382 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 ARHGEF28Q8N1W1 1705 aaKnown RBP6.98□□□□□ -1.29
CSMD3-208ENST00000497026 KIAA1210Q9ULL0 1709 aa6.98□□□□□ -1.29
CSMD3-208ENST00000497026 DLC1Q96QB1 1528 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 FMN2Q9NZ56 1722 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 ARL4DP49703 201 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 TMC1Q8TDI8 760 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 RUSC1Q9BVN2 902 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 USP26Q9BXU7 913 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 OSGEPQ9NPF4 335 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 RAXQ9Y2V3 346 aa6.97□□□□□ -1.29
CSMD3-208ENST00000497026 A0A1W2PP55 124 aa6.96□□□□□ -1.3
CSMD3-208ENST00000497026 NDUFB5O43674 189 aa6.96□□□□□ -1.3
CSMD3-208ENST00000497026 SPRED3Q2MJR0 410 aa6.96□□□□□ -1.3
CSMD3-208ENST00000497026 UTP4Q969X6 686 aaKnown RBP6.96□□□□□ -1.3
CSMD3-208ENST00000497026 CEP41Q9BYV8 373 aa6.96□□□□□ -1.3
CSMD3-208ENST00000497026 BHLHE41Q9C0J9 482 aaPredicted RBP6.96□□□□□ -1.3
CSMD3-208ENST00000497026 C1orf167Q5SNV9 1468 aa6.96□□□□□ -1.3
CSMD3-208ENST00000497026 RGPD8O14715 1765 aaPredicted RBP6.95□□□□□ -1.3
CSMD3-208ENST00000497026 ADGRB2O60241 1585 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 ATF3P18847 181 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 BRINP3Q76B58 766 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 WAPLQ7Z5K2 1190 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 WNT8BQ93098 351 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 FAM46AQ96IP4 442 aaKnown RBP6.95□□□□□ -1.3
CSMD3-208ENST00000497026 SIN3AQ96ST3 1273 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 LIN7BQ9HAP6 207 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 STK26Q9P289 416 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 STOML1Q9UBI4 398 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 TRPM1Q7Z4N2 1603 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 SHPRHQ149N8 1683 aa6.95□□□□□ -1.3
CSMD3-208ENST00000497026 DHX15O43143 795 aaKnown RBP6.94□□□□□ -1.3
CSMD3-208ENST00000497026 SART1O43290 800 aaKnown RBP6.94□□□□□ -1.3
CSMD3-208ENST00000497026 ESRRAP11474 423 aaPredicted RBP6.94□□□□□ -1.3
CSMD3-208ENST00000497026 GRIA4P48058 902 aa6.94□□□□□ -1.3
CSMD3-208ENST00000497026 PREPP48147 710 aa6.94□□□□□ -1.3
CSMD3-208ENST00000497026 GSTM4Q03013 218 aa6.94□□□□□ -1.3
CSMD3-208ENST00000497026 GALNT12Q8IXK2 581 aa6.94□□□□□ -1.3
CSMD3-208ENST00000497026 NIF3L1Q9GZT8 377 aa6.94□□□□□ -1.3
CSMD3-208ENST00000497026 USP32Q8NFA0 1604 aa6.94□□□□□ -1.3
CSMD3-208ENST00000497026 A0A096LPE4 126 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 A0A1W2PPZ6 126 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 HMX2A2RU54 273 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 DLGAP3O95886 979 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 TRIM42Q8IWZ5 723 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 TCF12Q99081 682 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 KCNF1Q9H3M0 494 aa6.93□□□□□ -1.3
CSMD3-208ENST00000497026 CLSPNQ9HAW4 1339 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms