RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 LAMB1P07942 1786 aa25.88■■□□□ 1.73
C9orf3-222ENST00000496567 ITGBL1O95965 494 aaPredicted RBP25.87■■□□□ 1.73
C9orf3-222ENST00000496567 METTL16Q86W50 562 aaKnown RBP25.87■■□□□ 1.73
C9orf3-222ENST00000496567 USP26Q9BXU7 913 aa25.87■■□□□ 1.73
C9orf3-222ENST00000496567 TRAF5O00463 557 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 TBC1D12O60347 775 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 RNF20Q5VTR2 975 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 DLK2Q6UY11 383 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 ROBO3Q96MS0 1386 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 SEC24BO95487 1268 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 MAP3K10Q02779 954 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 NECTIN1Q15223 517 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 BACH2Q9BYV9 841 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.86■■□□□ 1.731e-7■■■□□ 18.8
C9orf3-222ENST00000496567 ZNF287Q9HBT7 754 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 SWAP70Q9UH65 585 aa25.86■■□□□ 1.73
C9orf3-222ENST00000496567 HAND2P61296 217 aa25.85■■□□□ 1.73
C9orf3-222ENST00000496567 FSTL1Q12841 308 aa25.85■■□□□ 1.73
C9orf3-222ENST00000496567 MCCP23508 829 aa25.84■■□□□ 1.73
C9orf3-222ENST00000496567 EVX2Q03828 476 aa25.84■■□□□ 1.73
C9orf3-222ENST00000496567 GABPAQ06546 454 aa25.84■■□□□ 1.73
C9orf3-222ENST00000496567 PDE4BQ07343 736 aa25.84■■□□□ 1.73
C9orf3-222ENST00000496567 C16orf86Q6ZW13 317 aa25.84■■□□□ 1.73
C9orf3-222ENST00000496567 MIGA2Q7L4E1 593 aa25.84■■□□□ 1.73
C9orf3-222ENST00000496567 SIPA1L1O43166 1804 aa25.83■■□□□ 1.73
C9orf3-222ENST00000496567 LAMA4Q16363 1823 aa25.83■■□□□ 1.73
C9orf3-222ENST00000496567 PPP1R12BO60237 982 aaPredicted RBP25.83■■□□□ 1.73
C9orf3-222ENST00000496567 CYP21A2P08686 494 aa25.83■■□□□ 1.73
C9orf3-222ENST00000496567 CTDSPL2Q05D32 466 aa25.83■■□□□ 1.73
C9orf3-222ENST00000496567 CREB3L3Q68CJ9 461 aa25.83■■□□□ 1.73
C9orf3-222ENST00000496567 DYNLL2Q96FJ2 89 aa25.83■■□□□ 1.73
C9orf3-222ENST00000496567 PCP11498 1178 aaKnown RBP25.82■■□□□ 1.72
C9orf3-222ENST00000496567 HSPA4P34932 840 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 ZNF341Q9BYN7 854 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 RNF41Q9H4P4 317 aaPredicted RBP25.82■■□□□ 1.72
C9orf3-222ENST00000496567 UPF2Q9HAU5 1272 aaKnown RBP25.82■■□□□ 1.72
C9orf3-222ENST00000496567 SSC5DA1L4H1 1573 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 SMIM22K7EJ46 135 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 SLC27A2O14975 620 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 CDK8P49336 464 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 AKNAD1Q5T1N1 836 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 ZNF408Q9H9D4 720 aa25.82■■□□□ 1.72
C9orf3-222ENST00000496567 ZKSCAN1P17029 563 aaPredicted RBP25.81■■□□□ 1.72
C9orf3-222ENST00000496567 FMR1Q06787 632 aaKnown RBP eCLIP25.81■■□□□ 1.72
C9orf3-222ENST00000496567 MFSD6Q6ZSS7 791 aa25.81■■□□□ 1.72
C9orf3-222ENST00000496567 STK11IPQ8N1F8 1099 aa25.81■■□□□ 1.72
C9orf3-222ENST00000496567 STAG1Q8WVM7 1258 aa25.81■■□□□ 1.72
C9orf3-222ENST00000496567 DNAJC18Q9H819 358 aa25.81■■□□□ 1.72
C9orf3-222ENST00000496567 MKNK2Q9HBH9 465 aa25.81■■□□□ 1.72
C9orf3-222ENST00000496567 PASKQ96RG2 1323 aa25.81■■□□□ 1.72
C9orf3-222ENST00000496567 FAM196BA6NMK8 535 aa25.8■■□□□ 1.72
C9orf3-222ENST00000496567 CELF2O95319 508 aaKnown RBP25.8■■□□□ 1.72
C9orf3-222ENST00000496567 FKBP1BP68106 108 aa25.79■■□□□ 1.72
C9orf3-222ENST00000496567 TATDN1Q6P1N9 297 aa25.79■■□□□ 1.72
C9orf3-222ENST00000496567 ARMC9Q7Z3E5 817 aa25.79■■□□□ 1.72
C9orf3-222ENST00000496567 TBC1D10CQ8IV04 446 aa25.79■■□□□ 1.72
C9orf3-222ENST00000496567 SLC44A5Q8NCS7 719 aa25.79■■□□□ 1.72
C9orf3-222ENST00000496567 NBPF3Q9H094 633 aa25.79■■□□□ 1.72
C9orf3-222ENST00000496567 FGRP09769 529 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 SLURP2P0DP57 97 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 SHMT1P34896 483 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 IREB2P48200 963 aaKnown RBP25.78■■□□□ 1.72
C9orf3-222ENST00000496567 PRKG1Q13976 671 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 TTLL12Q14166 644 aaPredicted RBP25.78■■□□□ 1.72
C9orf3-222ENST00000496567 TRPM7Q96QT4 1865 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 USP2O75604 605 aaPredicted RBP25.78■■□□□ 1.72
C9orf3-222ENST00000496567 NT5C2P49902 561 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 TSGA10IPQ3SY00 556 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 C2orf69Q8N8R5 385 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 KCNB2Q92953 911 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 KLRG1Q96E93 195 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 CNNM2Q9H8M5 875 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 GBA2Q9HCG7 927 aaPredicted RBP25.78■■□□□ 1.72
C9orf3-222ENST00000496567 ZNF112Q9UJU3 913 aa25.78■■□□□ 1.72
C9orf3-222ENST00000496567 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.78■■□□□ 1.72
C9orf3-222ENST00000496567 ORC4O43929 436 aa25.77■■□□□ 1.72
C9orf3-222ENST00000496567 TRDNQ13061 729 aa25.77■■□□□ 1.72
C9orf3-222ENST00000496567 MAP3K11Q16584 847 aa25.77■■□□□ 1.72
C9orf3-222ENST00000496567 CERKLQ49MI3 558 aaPredicted RBP25.77■■□□□ 1.72
C9orf3-222ENST00000496567 ZNF444Q8N0Y2 327 aaPredicted RBP25.77■■□□□ 1.72
C9orf3-222ENST00000496567 CCDC17Q96LX7 622 aa25.77■■□□□ 1.72
C9orf3-222ENST00000496567 TOMM22Q9NS69 142 aa25.77■■□□□ 1.72
C9orf3-222ENST00000496567 ANGEL1Q9UNK9 670 aaKnown RBP25.77■■□□□ 1.72
C9orf3-222ENST00000496567 PHF20L1A8MW92 1017 aa25.76■■□□□ 1.71
C9orf3-222ENST00000496567 E7EWF7 191 aa25.76■■□□□ 1.71
C9orf3-222ENST00000496567 PRDM1O75626 825 aa25.76■■□□□ 1.71
C9orf3-222ENST00000496567 KRT32Q14532 448 aa25.76■■□□□ 1.71
C9orf3-222ENST00000496567 WRNIP1Q96S55 665 aa25.76■■□□□ 1.71
C9orf3-222ENST00000496567 CTNND1O60716 968 aaKnown RBP25.75■■□□□ 1.71
C9orf3-222ENST00000496567 CST9Q5W186 159 aa25.75■■□□□ 1.71
C9orf3-222ENST00000496567 KRT23Q9C075 422 aa25.75■■□□□ 1.71
C9orf3-222ENST00000496567 INCENPQ9NQS7 918 aa25.75■■□□□ 1.71
C9orf3-222ENST00000496567 FZD1Q9UP38 647 aa25.75■■□□□ 1.71
C9orf3-222ENST00000496567 PAPPA2Q9BXP8 1791 aa25.75■■□□□ 1.71
C9orf3-222ENST00000496567 MYH8P13535 1937 aa25.75■■□□□ 1.71
C9orf3-222ENST00000496567 RASA1P20936 1047 aa25.74■■□□□ 1.71
C9orf3-222ENST00000496567 RASEFQ8IZ41 740 aa25.74■■□□□ 1.71
C9orf3-222ENST00000496567 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.74■■□□□ 1.71
C9orf3-222ENST00000496567 TACC3Q9Y6A5 838 aa25.74■■□□□ 1.71
C9orf3-222ENST00000496567 UNCXA6NJT0 531 aa25.73■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms