RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 CNGA4Q8IV77 575 aa11.02□□□□□ -0.65
SYNE1-230ENST00000495090 NAPGQ99747 312 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-230ENST00000495090 TEX13AQ9BXU3 409 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-230ENST00000495090 ANGEL1Q9UNK9 670 aaKnown RBP11.02□□□□□ -0.65
SYNE1-230ENST00000495090 PHF8Q9UPP1 1060 aa11.02□□□□□ -0.65
SYNE1-230ENST00000495090 PARP4Q9UKK3 1724 aaKnown RBP11.02□□□□□ -0.65
SYNE1-230ENST00000495090 A0A087WZG4 1122 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 N4BP1O75113 896 aaKnown RBP11.01□□□□□ -0.65
SYNE1-230ENST00000495090 FGAP02671 866 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 PTPREP23469 700 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 FOXO4P98177 505 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 TRIM29Q14134 588 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 MTF1Q14872 753 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 MAP9Q49MG5 647 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 ZNF569Q5MCW4 686 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 PACS2Q86VP3 889 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 NEUROD6Q96NK8 337 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 CLIC6Q96NY7 704 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 IRX2Q9BZI1 471 aaPredicted RBP11.01□□□□□ -0.65
SYNE1-230ENST00000495090 LZTFL1Q9NQ48 299 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 ECM29Q5VYK3 1845 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 KIF1AQ12756 1690 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 H7C1W4 665 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 MYL6BP14649 208 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 METAP2P50579 478 aaKnown RBP eCLIP11.01□□□□□ -0.65
SYNE1-230ENST00000495090 EIF5P55010 431 aaKnown RBP11.01□□□□□ -0.65
SYNE1-230ENST00000495090 TRDNQ13061 729 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 PTPN21Q16825 1174 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 SPATA1Q5VX52 437 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 LMBR1LQ6UX01 489 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 TMTC1Q8IUR5 882 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 IGSF22Q8N9C0 903 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 APPBP2Q92624 585 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 CCDC102AQ96A19 550 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 ZSWIM4Q9H7M6 989 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 SLC52A2Q9HAB3 445 aa11.01□□□□□ -0.65
SYNE1-230ENST00000495090 ADD3Q9UEY8 706 aaKnown RBP11.01□□□□□ -0.65
SYNE1-230ENST00000495090 EYA2O00167 538 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 SH2B2O14492 632 aaPredicted RBP11□□□□□ -0.65
SYNE1-230ENST00000495090 ZNF213O14771 459 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 ATP2B1P20020 1258 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 AMPD2Q01433 879 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 RBL2Q08999 1139 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 DNAJC21Q5F1R6 531 aaKnown RBP11□□□□□ -0.65
SYNE1-230ENST00000495090 PLBD2Q8NHP8 589 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 AFAP1L1Q8TED9 768 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 TMEM87BQ96K49 555 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 MED15Q96RN5 788 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 FAM204AQ9H8W3 233 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 FBXO2Q9UK22 296 aaPredicted RBP11□□□□□ -0.65
SYNE1-230ENST00000495090 WWC3Q9ULE0 1092 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 NID2Q14112 1375 aa11□□□□□ -0.65
SYNE1-230ENST00000495090 A0A087WUV0 522 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 TARSL2A2RTX5 802 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 LRRIQ3A6PVS8 624 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 FOXN1O15353 648 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SHOX2O60902 331 aaPredicted RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 PRPF6O94906 941 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SNRPA1P09661 255 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 HAND2P61296 217 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 TIMM10P62072 90 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 TRIM14Q14142 442 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 NTRK3Q16288 839 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 FILIP1LQ4L180 1135 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SWT1Q5T5J6 900 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 CDKAL1Q5VV42 579 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 FOXR1Q6PIV2 292 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 APOA5Q6Q788 366 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 NOSTRINQ8IVI9 506 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 STK11IPQ8N1F8 1099 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SLC35F6Q8N357 371 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 CCDC148Q8NFR7 591 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 WASF1Q92558 559 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 RPGRIP1Q96KN7 1286 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SAMSN1Q9NSI8 373 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 ATRNO75882 1429 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 BCL9LQ86UU0 1499 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 LAMB4A4D0S4 1761 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 ACTN4O43707 911 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 RNF40O75150 1001 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 IARSP41252 1262 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SF3B2Q13435 895 aaKnown RBP10.99□□□□□ -0.65
SYNE1-230ENST00000495090 RILPL1Q5EBL4 403 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SLC9C2Q5TAH2 1124 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 TADA2BQ86TJ2 420 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SGMS1Q86VZ5 419 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 AIFM3Q96NN9 605 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 NCAPGQ9BPX3 1015 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 SUGCTQ9HAC7 445 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 MYO6Q9UM54 1294 aa10.99□□□□□ -0.65
SYNE1-230ENST00000495090 POLR2DO15514 142 aaKnown RBP10.98□□□□□ -0.65
SYNE1-230ENST00000495090 RHOXF2BP0C7M4 288 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 PRR29P0C7W0 189 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 CUL4BQ13620 913 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 TRMT44Q8IYL2 757 aaKnown RBP10.98□□□□□ -0.65
SYNE1-230ENST00000495090 RHOXF2Q9BQY4 288 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 FOXP1Q9H334 677 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-230ENST00000495090 DEF6Q9H4E7 631 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 SERTAD1Q9UHV2 236 aa10.98□□□□□ -0.65
SYNE1-230ENST00000495090 CEP131Q9UPN4 1083 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms