RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 PDE1AP54750 535 aa19.22■□□□□ 0.67
LIME1-209ENST00000494776 MAP3K10Q02779 954 aa19.22■□□□□ 0.67
LIME1-209ENST00000494776 NUCB1Q02818 461 aa19.22■□□□□ 0.67
LIME1-209ENST00000494776 LCORLQ8N3X6 602 aa19.22■□□□□ 0.67
LIME1-209ENST00000494776 ARMT1Q9H993 441 aa19.22■□□□□ 0.67
LIME1-209ENST00000494776 HERC5Q9UII4 1024 aaKnown RBP19.22■□□□□ 0.67
LIME1-209ENST00000494776 CTNND1O60716 968 aaKnown RBP19.21■□□□□ 0.67
LIME1-209ENST00000494776 CHGBP05060 677 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 PPATQ06203 517 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 NOL9Q5SY16 702 aaKnown RBP19.21■□□□□ 0.67
LIME1-209ENST00000494776 OTUD7BQ6GQQ9 843 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 FOXP4Q8IVH2 680 aaPredicted RBP19.21■□□□□ 0.67
LIME1-209ENST00000494776 SCYL3Q8IZE3 742 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 FSD1Q9BTV5 496 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 STAP2Q9UGK3 403 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 SALL3Q9BXA9 1300 aa19.21■□□□□ 0.67
LIME1-209ENST00000494776 RNF113AO15541 343 aaKnown RBP19.2■□□□□ 0.66
LIME1-209ENST00000494776 CAPN15O75808 1086 aa19.2■□□□□ 0.66
LIME1-209ENST00000494776 POLR3DP05423 398 aaPredicted RBP19.2■□□□□ 0.66
LIME1-209ENST00000494776 ZFYP08048 801 aaPredicted RBP19.2■□□□□ 0.66
LIME1-209ENST00000494776 PPIL2Q13356 520 aa19.2■□□□□ 0.66
LIME1-209ENST00000494776 TTC6Q86TZ1 520 aa19.2■□□□□ 0.66
LIME1-209ENST00000494776 IRF6O14896 467 aa19.19■□□□□ 0.66
LIME1-209ENST00000494776 ALDH1A1P00352 501 aa19.19■□□□□ 0.66
LIME1-209ENST00000494776 SNAPC2Q13487 334 aa19.19■□□□□ 0.66
LIME1-209ENST00000494776 IFNL1Q8IU54 200 aa19.19■□□□□ 0.66
LIME1-209ENST00000494776 SDR42E1Q8WUS8 393 aa19.19■□□□□ 0.66
LIME1-209ENST00000494776 DDRGK1Q96HY6 314 aa19.19■□□□□ 0.66
LIME1-209ENST00000494776 CCL15-CCL14A0A0B4J2E2 113 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 CETPP11597 493 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 CCL15Q16663 113 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 APPBP2Q92624 585 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 MS4A4AQ96JQ5 239 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 PUS7LQ9H0K6 701 aaKnown RBP19.18■□□□□ 0.66
LIME1-209ENST00000494776 MCM9Q9NXL9 1143 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 SLC4A4Q9Y6R1 1079 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 ZHX2Q9Y6X8 837 aa19.18■□□□□ 0.66
LIME1-209ENST00000494776 FOCADQ5VW36 1801 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 TBC1D8O95759 1140 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 PTPRAP18433 802 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 AMOTL1Q8IY63 956 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 EVI5LQ96CN4 794 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 DCP1AQ9NPI6 582 aaPredicted RBP19.17■□□□□ 0.66
LIME1-209ENST00000494776 ATP8A2Q9NTI2 1148 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 CDK5RAP2Q96SN8 1893 aa19.17■□□□□ 0.66
LIME1-209ENST00000494776 TESPA1A2RU30 521 aaPredicted RBP19.16■□□□□ 0.66
LIME1-209ENST00000494776 TRIM6-TRIM34B2RNG4 842 aa19.16■□□□□ 0.66
LIME1-209ENST00000494776 PRKAB2O43741 272 aa19.16■□□□□ 0.66
LIME1-209ENST00000494776 CAP2P40123 477 aa19.16■□□□□ 0.66
LIME1-209ENST00000494776 BRI3BPQ8WY22 251 aa19.16■□□□□ 0.66
LIME1-209ENST00000494776 SERPINB13Q9UIV8 391 aa19.16■□□□□ 0.66
LIME1-209ENST00000494776 MYH7P12883 1935 aa19.15■□□□□ 0.66
LIME1-209ENST00000494776 IGF2BP3O00425 579 aaKnown RBP eCLIP19.15■□□□□ 0.66
LIME1-209ENST00000494776 METTL16Q86W50 562 aaKnown RBP19.15■□□□□ 0.66
LIME1-209ENST00000494776 PLEKHM2Q8IWE5 1019 aa19.15■□□□□ 0.66
LIME1-209ENST00000494776 OSBP2Q969R2 916 aa19.15■□□□□ 0.66
LIME1-209ENST00000494776 PTPN18Q99952 460 aa19.15■□□□□ 0.66
LIME1-209ENST00000494776 MYH1P12882 1939 aa19.14■□□□□ 0.65
LIME1-209ENST00000494776 PLCD1P51178 756 aa19.14■□□□□ 0.65
LIME1-209ENST00000494776 RILPL2Q969X0 211 aa19.14■□□□□ 0.65
LIME1-209ENST00000494776 EHD4Q9H223 541 aa19.14■□□□□ 0.65
LIME1-209ENST00000494776 DNAJC18Q9H819 358 aa19.14■□□□□ 0.65
LIME1-209ENST00000494776 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.14■□□□□ 0.65
LIME1-209ENST00000494776 CXCL11O14625 94 aa19.13■□□□□ 0.65
LIME1-209ENST00000494776 RRP1BQ14684 758 aaKnown RBP19.13■□□□□ 0.65
LIME1-209ENST00000494776 STRBPQ96SI9 672 aaKnown RBP19.13■□□□□ 0.65
LIME1-209ENST00000494776 KCNH4Q9UQ05 1017 aa19.13■□□□□ 0.65
LIME1-209ENST00000494776 TRIM75PA6NK02 468 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 USP17L5A8MUK1 530 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 M0R2C6 588 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 GPAA1O43292 621 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 GDF11O95390 407 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 APPP05067 770 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 ASNSP08243 561 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 GNAT2P19087 354 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 CCDC84Q86UT8 332 aaPredicted RBP19.12■□□□□ 0.65
LIME1-209ENST00000494776 TBC1D2Q9BYX2 928 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 OSBPL3Q9H4L5 887 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 AS3MTQ9HBK9 375 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 AFG3L2Q9Y4W6 797 aa19.12■□□□□ 0.65
LIME1-209ENST00000494776 DOCK1Q14185 1865 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 NAV1Q8NEY1 1877 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 BTBD19C9JJ37 291 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 USP17L12C9JPN9 530 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 USP17L21D6R901 530 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 NEFLP07196 543 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 CYP2D6P10635 497 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 TAF1CQ15572 869 aaPredicted RBP19.11■□□□□ 0.65
LIME1-209ENST00000494776 CERKLQ49MI3 558 aaPredicted RBP19.11■□□□□ 0.65
LIME1-209ENST00000494776 ZMYM1Q5SVZ6 1142 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 FASTKD5Q7L8L6 764 aaKnown RBP19.11■□□□□ 0.65
LIME1-209ENST00000494776 FAM43AQ8N2R8 423 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 SEC62Q99442 399 aaKnown RBP19.11■□□□□ 0.65
LIME1-209ENST00000494776 GINM1Q9NU53 330 aa19.11■□□□□ 0.65
LIME1-209ENST00000494776 SIPA1L1O43166 1804 aa19.1■□□□□ 0.65
LIME1-209ENST00000494776 GPR25O00155 361 aa19.1■□□□□ 0.65
LIME1-209ENST00000494776 CENPBP07199 599 aaPredicted RBP19.1■□□□□ 0.65
LIME1-209ENST00000494776 CRHR2Q13324 411 aa19.1■□□□□ 0.65
LIME1-209ENST00000494776 GADL1Q6ZQY3 521 aa19.1■□□□□ 0.65
LIME1-209ENST00000494776 ZNF280CQ8ND82 737 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms