RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CDKL5O76039 1030 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 SLC3A2P08195 630 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 MAPK8IP2Q13387 824 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 CCAR2Q8N163 923 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 CGNQ9P2M7 1197 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 ECM29Q5VYK3 1845 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 GTF2E1P29083 439 aaPredicted RBP19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 TRIM29Q14134 588 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 SLC39A14Q15043 492 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 ALX1Q15699 326 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 SHC4Q6S5L8 630 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 CELF1Q92879 486 aaKnown RBP19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 WNK3Q9BYP7 1800 aa19.05■□□□□ 0.64
CCDC88B-210ENST00000494566 SSRP1Q08945 709 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 WTAPQ15007 396 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 ARMCX5Q6P1M9 558 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 SGMS1Q86VZ5 419 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 DPF2Q92785 391 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 AK7Q96M32 723 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 GRIN1Q05586 938 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 NR5A1Q13285 461 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 PNOCQ13519 176 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 NACAP1Q9BZK3 213 aa19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 SRP68Q9UHB9 627 aaKnown RBP19.04■□□□□ 0.64
CCDC88B-210ENST00000494566 ARAP2Q8WZ64 1704 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 BAZ2BQ9UIF8 2168 aaKnown RBP19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 COL1A1P02452 1464 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 ANKRD18AQ8IVF6 992 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 PAXBP1Q9Y5B6 917 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 DOCK2Q92608 1830 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 SYKP43405 635 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 PPARAQ07869 468 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 PTPAQ15257 358 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 RTN1Q16799 776 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 E4F1Q66K89 784 aaPredicted RBP19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 SPATA31A5Q5VU36 1347 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 SPATA31A7Q8IWB4 1347 aa19.03■□□□□ 0.64
CCDC88B-210ENST00000494566 FOXN1O15353 648 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 TBC1D9BQ66K14 1250 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 MRFAP1L1Q96HT8 127 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 MAP3K14Q99558 947 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 TFCP2L1Q9NZI6 479 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 TMEM232C9JQI7 657 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 CMA1P23946 247 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 LIFRP42702 1097 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 KIF18AQ8NI77 898 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 KRT23Q9C075 422 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 DNAI1Q9UI46 699 aa19.02■□□□□ 0.64
CCDC88B-210ENST00000494566 BAZ2AQ9UIF9 1905 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 CAVIN2O95810 425 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 SARM1Q6SZW1 724 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 DIS3L2Q8IYB7 885 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 PDILTQ8N807 584 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 OXER1Q8TDS5 423 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 STAG1Q8WVM7 1258 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 CDC5LQ99459 802 aaKnown RBP19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 MAGEB6P1A0A0J9YX57 407 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 ZNF827Q17R98 1081 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 ZNF384Q8TF68 577 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 CNNM2Q9H8M5 875 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 FMNL1O95466 1100 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 SFPQP23246 707 aaKnown RBP eCLIP19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 CDCA7Q9BWT1 371 aaPredicted RBP19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 OGFRQ9NZT2 677 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 MINPP1Q9UNW1 487 aa19.01■□□□□ 0.63
CCDC88B-210ENST00000494566 ERICH2A1L162 156 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 SERPINC1P01008 464 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 CFAP100Q494V2 611 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 PPP1R13BQ96KQ4 1090 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 MYH2Q9UKX2 1941 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 TNKSO95271 1327 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 FAM205CA6NFA0 338 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 TOB1P50616 345 aaPredicted RBP19■□□□□ 0.63
CCDC88B-210ENST00000494566 LONRF3Q496Y0 759 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 ZNF654Q8IZM8 581 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 UBAC1Q9BSL1 405 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 NAT10Q9H0A0 1025 aaKnown RBP19■□□□□ 0.63
CCDC88B-210ENST00000494566 ZNF652Q9Y2D9 606 aa19■□□□□ 0.63
CCDC88B-210ENST00000494566 PNPLA7Q6ZV29 1317 aa18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 NYAP1Q6ZVC0 841 aa18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 THRAP3Q9Y2W1 955 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 IFNAR1P17181 557 aa18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 SART3Q15020 963 aaKnown RBP18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 AMIGO3Q86WK7 504 aa18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 FAM84BQ96KN1 310 aaPredicted RBP18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 ZSWIM4Q9H7M6 989 aa18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 BCL9LQ86UU0 1499 aa18.99■□□□□ 0.63
CCDC88B-210ENST00000494566 COBLO75128 1261 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 NOSTRINQ8IVI9 506 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 GRAMD1CQ8IYS0 662 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 SHISA4Q96DD7 197 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 DDX41Q9UJV9 622 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 CICQ96RK0 1608 aaPredicted RBP18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 GNAT2P19087 354 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 NLRP12P59046 1061 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 TRMT44Q8IYL2 757 aaKnown RBP18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 PCDHB6Q9Y5E3 794 aa18.98■□□□□ 0.63
CCDC88B-210ENST00000494566 AHDC1Q5TGY3 1603 aaPredicted RBP18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms