RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 BTBD19C9JJ37 291 aa29.95■■■□□ 2.39
UPF3A-209ENST00000492270 FKTNO75072 461 aa29.95■■■□□ 2.39
UPF3A-209ENST00000492270 PTPRAP18433 802 aa29.95■■■□□ 2.39
UPF3A-209ENST00000492270 SLC4A8Q2Y0W8 1093 aa29.95■■■□□ 2.39
UPF3A-209ENST00000492270 CTU1Q7Z7A3 348 aaKnown RBP29.95■■■□□ 2.39
UPF3A-209ENST00000492270 CCDC84Q86UT8 332 aaPredicted RBP29.95■■■□□ 2.39
UPF3A-209ENST00000492270 RIOK1Q9BRS2 568 aaKnown RBP29.95■■■□□ 2.39
UPF3A-209ENST00000492270 DHX36Q9H2U1 1008 aaKnown RBP29.95■■■□□ 2.39
UPF3A-209ENST00000492270 TCRBV5S4A2TA0A5A2 114 aa29.94■■■□□ 2.38
UPF3A-209ENST00000492270 CTNND1O60716 968 aaKnown RBP29.94■■■□□ 2.38
UPF3A-209ENST00000492270 RRP1BQ14684 758 aaKnown RBP29.94■■■□□ 2.38
UPF3A-209ENST00000492270 TAF1CQ15572 869 aaPredicted RBP29.94■■■□□ 2.38
UPF3A-209ENST00000492270 SLFNL1Q499Z3 407 aa29.94■■■□□ 2.38
UPF3A-209ENST00000492270 TSHZ3Q63HK5 1081 aa29.94■■■□□ 2.38
UPF3A-209ENST00000492270 TMED8Q6PL24 325 aaPredicted RBP29.94■■■□□ 2.38
UPF3A-209ENST00000492270 PICK1Q9NRD5 415 aa29.94■■■□□ 2.38
UPF3A-209ENST00000492270 ZSWIM8A7E2V4 1837 aa29.94■■■□□ 2.38
UPF3A-209ENST00000492270 DNAJC18Q9H819 358 aa29.93■■■□□ 2.38
UPF3A-209ENST00000492270 ECHDC1Q9NTX5 307 aa29.93■■■□□ 2.38
UPF3A-209ENST00000492270 PI4KBQ9UBF8 816 aa29.93■■■□□ 2.38
UPF3A-209ENST00000492270 ZHX2Q9Y6X8 837 aa29.93■■■□□ 2.38
UPF3A-209ENST00000492270 BAZ2AQ9UIF9 1905 aaKnown RBP29.92■■■□□ 2.38
UPF3A-209ENST00000492270 MAGEB6P1A0A0J9YX57 407 aa29.92■■■□□ 2.38
UPF3A-209ENST00000492270 USP5P45974 858 aa29.92■■■□□ 2.38
UPF3A-209ENST00000492270 MOGSQ13724 837 aa29.92■■■□□ 2.38
UPF3A-209ENST00000492270 CERS3Q8IU89 383 aa29.92■■■□□ 2.38
UPF3A-209ENST00000492270 HERC5Q9UII4 1024 aaKnown RBP29.92■■■□□ 2.38
UPF3A-209ENST00000492270 CHGBP05060 677 aa29.91■■■□□ 2.38
UPF3A-209ENST00000492270 ADD2P35612 726 aa29.9■■■□□ 2.38
UPF3A-209ENST00000492270 AFG3L2Q9Y4W6 797 aa29.9■■■□□ 2.38
UPF3A-209ENST00000492270 LOC285556D6RIA3 1793 aa29.9■■■□□ 2.38
UPF3A-209ENST00000492270 ZFYVE28Q9HCC9 887 aa29.89■■■□□ 2.38
UPF3A-209ENST00000492270 CXCL11O14625 94 aa29.88■■■□□ 2.37
UPF3A-209ENST00000492270 CAP2P40123 477 aa29.88■■■□□ 2.37
UPF3A-209ENST00000492270 LCORLQ8N3X6 602 aa29.88■■■□□ 2.37
UPF3A-209ENST00000492270 OTUD7AQ8TE49 926 aaPredicted RBP29.88■■■□□ 2.37
UPF3A-209ENST00000492270 MYH8P13535 1937 aa29.87■■■□□ 2.37
UPF3A-209ENST00000492270 ANKRD23Q86SG2 305 aa29.87■■■□□ 2.37
UPF3A-209ENST00000492270 METTL16Q86W50 562 aaKnown RBP29.87■■■□□ 2.37
UPF3A-209ENST00000492270 CRACR2BQ8N4Y2 399 aaPredicted RBP29.87■■■□□ 2.37
UPF3A-209ENST00000492270 ZCCHC17Q9NP64 241 aaKnown RBP29.87■■■□□ 2.37
UPF3A-209ENST00000492270 A0A0G2JLL6 359 aaPredicted RBP29.86■■■□□ 2.37
UPF3A-209ENST00000492270 HLA-DOAP06340 250 aa29.86■■■□□ 2.37
UPF3A-209ENST00000492270 JAG1P78504 1218 aa29.86■■■□□ 2.37
UPF3A-209ENST00000492270 SHROOM1Q2M3G4 852 aaPredicted RBP29.86■■■□□ 2.37
UPF3A-209ENST00000492270 PRRT2Q7Z6L0 340 aaPredicted RBP29.86■■■□□ 2.37
UPF3A-209ENST00000492270 FOXP4Q8IVH2 680 aaPredicted RBP29.86■■■□□ 2.37
UPF3A-209ENST00000492270 CD99L2Q8TCZ2 262 aa29.86■■■□□ 2.37
UPF3A-209ENST00000492270 GPATCH3Q96I76 525 aa29.86■■■□□ 2.37
UPF3A-209ENST00000492270 DDX24Q9GZR7 859 aaKnown RBP eCLIP29.86■■■□□ 2.37
UPF3A-209ENST00000492270 ARMT1Q9H993 441 aa29.86■■■□□ 2.37
UPF3A-209ENST00000492270 TRIM75PA6NK02 468 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 CCDC85CA6NKD9 419 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 PDHXO00330 501 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 CAP1Q01518 475 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 GPAT2Q6NUI2 795 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 EXOC6Q8TAG9 804 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 TRIM34Q9BYJ4 488 aa29.85■■■□□ 2.37
UPF3A-209ENST00000492270 CRNKL1Q9BZJ0 848 aaKnown RBP29.85■■■□□ 2.37
UPF3A-209ENST00000492270 SUPT16HQ9Y5B9 1047 aaKnown RBP29.85■■■□□ 2.37
UPF3A-209ENST00000492270 GDF11O95390 407 aa29.84■■■□□ 2.37
UPF3A-209ENST00000492270 SP3Q02447 781 aa29.84■■■□□ 2.37
UPF3A-209ENST00000492270 HDAC1Q13547 482 aaPredicted RBP29.84■■■□□ 2.37
UPF3A-209ENST00000492270 SDR42E1Q8WUS8 393 aa29.84■■■□□ 2.37
UPF3A-209ENST00000492270 MBD4O95243 580 aa29.83■■■□□ 2.37
UPF3A-209ENST00000492270 EVX2Q03828 476 aa29.83■■■□□ 2.37
UPF3A-209ENST00000492270 GADL1Q6ZQY3 521 aa29.83■■■□□ 2.37
UPF3A-209ENST00000492270 TLR2O60603 784 aa29.82■■■□□ 2.36
UPF3A-209ENST00000492270 ERO1AQ96HE7 468 aa29.82■■■□□ 2.36
UPF3A-209ENST00000492270 TTC41PQ6P2S7 1318 aa29.81■■■□□ 2.36
UPF3A-209ENST00000492270 PRKAB2O43741 272 aa29.81■■■□□ 2.36
UPF3A-209ENST00000492270 UBE3CQ15386 1083 aa29.81■■■□□ 2.36
UPF3A-209ENST00000492270 ANKRD45Q5TZF3 282 aa29.81■■■□□ 2.36
UPF3A-209ENST00000492270 TRIM17Q9Y577 477 aa29.81■■■□□ 2.36
UPF3A-209ENST00000492270 MGAMO43451 1857 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 ADGRA2Q96PE1 1338 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 PLCD1P51178 756 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 SPP2Q13103 211 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 OTOP1Q7RTM1 612 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 KBTBD3Q8NAB2 608 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 PI4K2BQ8TCG2 481 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 EHD4Q9H223 541 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 DCP1AQ9NPI6 582 aaPredicted RBP29.8■■■□□ 2.36
UPF3A-209ENST00000492270 SERPINB13Q9UIV8 391 aa29.8■■■□□ 2.36
UPF3A-209ENST00000492270 SALL3Q9BXA9 1300 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 USP17L5A8MUK1 530 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 AAMPQ13685 434 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 PKN2Q16513 984 aaKnown RBP29.79■■■□□ 2.36
UPF3A-209ENST00000492270 FASTKD5Q7L8L6 764 aaKnown RBP29.79■■■□□ 2.36
UPF3A-209ENST00000492270 TTC6Q86TZ1 520 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 ZNF280CQ8ND82 737 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 GCC1Q96CN9 775 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 PUS7LQ9H0K6 701 aaKnown RBP29.79■■■□□ 2.36
UPF3A-209ENST00000492270 MCM9Q9NXL9 1143 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 CPA4Q9UI42 421 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 HPS5Q9UPZ3 1129 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 HTTP42858 3142 aa29.79■■■□□ 2.36
UPF3A-209ENST00000492270 POLR3DP05423 398 aaPredicted RBP29.78■■■□□ 2.36
UPF3A-209ENST00000492270 CYP2C8P10632 490 aa29.78■■■□□ 2.36
UPF3A-209ENST00000492270 ZSCAN25Q6NSZ9 544 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms