RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP4-214ENST00000491791 LRRC37AA6NMS7 1700 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 CCDC69A6NI79 296 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 WTIPA6NIX2 430 aaPredicted RBP12.48□□□□□ -0.41
USP4-214ENST00000491791 GOLGA8AA7E2F4 631 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 PPP6R2O75170 966 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 BBOX1O75936 387 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 IARSP41252 1262 aaKnown RBP12.48□□□□□ -0.41
USP4-214ENST00000491791 MECOMQ03112 1051 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 FAM160A1Q05DH4 1040 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 PRR5LQ6MZQ0 368 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 MIGA1Q8NAN2 632 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 RBM46Q8TBY0 533 aaKnown RBP12.48□□□□□ -0.41
USP4-214ENST00000491791 FAM200AQ8TCP9 573 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 CRAMP1Q96RY5 1269 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 SENP2Q9HC62 589 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.48□□□□□ -0.41
USP4-214ENST00000491791 PODXL2Q9NZ53 605 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 CCDC39Q9UFE4 941 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 ABCF2Q9UG63 623 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 NAP1L2Q9ULW6 460 aaPredicted RBP12.48□□□□□ -0.41
USP4-214ENST00000491791 ECM29Q5VYK3 1845 aa12.48□□□□□ -0.41
USP4-214ENST00000491791 ERICH2A1L162 156 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 RANBP6O60518 1105 aaKnown RBP12.47□□□□□ -0.41
USP4-214ENST00000491791 NR1I2O75469 434 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 KCNA3P22001 575 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 TYRO3Q06418 890 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 SSRP1Q08945 709 aaKnown RBP12.47□□□□□ -0.41
USP4-214ENST00000491791 WTAPQ15007 396 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 SLC39A14Q15043 492 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 KRT40Q6A162 431 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 CTR9Q6PD62 1173 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 NBPF11Q86T75 865 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 FMR1NBQ8N0W7 255 aaPredicted RBP12.47□□□□□ -0.41
USP4-214ENST00000491791 CRACR2BQ8N4Y2 399 aaPredicted RBP12.47□□□□□ -0.41
USP4-214ENST00000491791 ANKS1AQ92625 1134 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 ALG1Q9BT22 464 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 CRNKL1Q9BZJ0 848 aaKnown RBP12.47□□□□□ -0.41
USP4-214ENST00000491791 NMRK2Q9NPI5 230 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 MKRN1Q9UHC7 482 aaKnown RBP12.47□□□□□ -0.41
USP4-214ENST00000491791 MRVI1Q9Y6F6 885 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 LAMB1P07942 1786 aa12.47□□□□□ -0.41
USP4-214ENST00000491791 ROBO3Q96MS0 1386 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 LTBP1Q14766 1721 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 NRXN2Q9P2S2 1712 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 ZNF500O60304 480 aaPredicted RBP12.46□□□□□ -0.41
USP4-214ENST00000491791 CALM1P0DP23 149 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 CALM2P0DP24 149 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 CALM3P0DP25 149 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 ATP2B4P23634 1241 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 CMA1P23946 247 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 KLRK1P26718 216 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 GSTO1P78417 241 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 DDR1Q08345 913 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 RTN1Q16799 776 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 ANO1Q5XXA6 986 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 CCAR1Q8IX12 1150 aaKnown RBP12.46□□□□□ -0.41
USP4-214ENST00000491791 ELOA2Q8IYF1 753 aaPredicted RBP12.46□□□□□ -0.41
USP4-214ENST00000491791 FANCBQ8NB91 859 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 BICD2Q8TD16 824 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 MRPS27Q92552 414 aaKnown RBP12.46□□□□□ -0.41
USP4-214ENST00000491791 TIGD1Q96MW7 591 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 MAP3K14Q99558 947 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 DCP1AQ9NPI6 582 aaPredicted RBP12.46□□□□□ -0.41
USP4-214ENST00000491791 RNF181Q9P0P0 153 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 ARPP21Q9UBL0 812 aaPredicted RBP12.46□□□□□ -0.41
USP4-214ENST00000491791 USP25Q9UHP3 1055 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 PCDHA7Q9UN72 937 aa12.46□□□□□ -0.41
USP4-214ENST00000491791 ARFGEF1Q9Y6D6 1849 aa12.46□□□□□ -0.42
USP4-214ENST00000491791 BRCA1P38398 1863 aaKnown RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 KIF28PB7ZC32 967 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 POLRMTO00411 1230 aaKnown RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 SPTLC2O15270 562 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 DDAH1O94760 285 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 DEXIO95424 95 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 SLC3A2P08195 630 aaKnown RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 IL1R1P14778 569 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 DYNLL1P63167 89 aaKnown RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 ST5P78524 1137 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 FUT2Q10981 343 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 FSTL1Q12841 308 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 AXDND1Q5T1B0 1012 aaPredicted RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 NFXL1Q6ZNB6 911 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 CCDC73Q6ZRK6 1079 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 ZNF804AQ7Z570 1209 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 MICU3Q86XE3 530 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 ZNF654Q8IZM8 581 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 RNF214Q8ND24 703 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 SDR42E1Q8WUS8 393 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 FAM163AQ96GL9 167 aaPredicted RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 RBM17Q96I25 401 aaKnown RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 ZSCAN10Q96SZ4 725 aaPredicted RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 UBAC1Q9BSL1 405 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 RNF26Q9BY78 433 aaPredicted RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 FOXP1Q9H334 677 aaPredicted RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 INCENPQ9NQS7 918 aa12.45□□□□□ -0.42
USP4-214ENST00000491791 RBM28Q9NW13 759 aaKnown RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 IQSEC3Q9UPP2 1182 aaPredicted RBP12.45□□□□□ -0.42
USP4-214ENST00000491791 SERPINB2P05120 415 aa12.44□□□□□ -0.42
USP4-214ENST00000491791 TPM3P06753 285 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms