RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 MYO1EQ12965 1108 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CALCOCO2Q13137 446 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 TMEM67Q5HYA8 995 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC102BQ68D86 513 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 LRRC31Q6UY01 552 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 PDCD7Q8N8D1 485 aaKnown RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CSRNP2Q9H175 543 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 MTUS1Q9ULD2 1270 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 PTPRCP08575 1304 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 BICDL2A1A5D9 508 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 EIF4E1BA6NMX2 242 aaKnown RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 GNAT1P11488 350 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 MECOMQ03112 1051 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 PKP1Q13835 747 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 RILPL1Q5EBL4 403 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 ARMC3Q5W041 872 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC25Q86WR0 208 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 KIRREL3Q8IZU9 778 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 ZSCAN16Q9H4T2 348 aaPredicted RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 MCM8Q9UJA3 840 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CCT6AP40227 531 aaKnown RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 STAT6P42226 847 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 ITIH3Q06033 890 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 NSMCE1Q8WV22 266 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 C6orf50Q9HD87 102 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC151A5D8V7 595 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 RPS6KA3P51812 740 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 TTC22Q5TAA0 569 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 TMCO5AQ8N6Q1 288 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 PARD3BQ8TEW8 1205 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 CACTINQ8WUQ7 758 aaKnown RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 TRMT112Q9UI30 125 aaKnown RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 NSFL1CQ9UNZ2 370 aaKnown RBP8.05□□□□□ -1.12
SYNE1-228ENST00000490135 AGTPBP1Q9UPW5 1226 aa8.05□□□□□ -1.12
SYNE1-228ENST00000490135 SGSM2O43147 1006 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 DAPK3O43293 454 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 ETF1P62495 437 aaKnown RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 PLS1Q14651 629 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 CASP8Q14790 479 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 SPATA21Q7Z572 469 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 RPAP2Q8IXW5 612 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 ATP6V0A1Q93050 837 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 INTS4Q96HW7 963 aaKnown RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 GDAP1L1Q96MZ0 367 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 CENPKQ9BS16 269 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 TRAIPQ9BWF2 469 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 CLSTN2Q9H4D0 955 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 NOD1Q9Y239 953 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 SEL1L2Q5TEA6 688 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 ZNF692Q9BU19 519 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 ZMYM4Q5VZL5 1548 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 OPHN1O60890 802 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 BMP15O95972 392 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 SPAG1Q07617 926 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 CFAP70Q5T0N1 1121 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 MAP7D3Q8IWC1 876 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 NACA2Q9H009 215 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 BOLA2Q9H3K6 86 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 ABCB6Q9NP58 842 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 TMTC2Q8N394 836 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 LARP6Q9BRS8 491 aaKnown RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 TLDC2A0PJX2 215 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 SPECC1L-ADORA2AF8WAN1 911 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 PDHA1P08559 390 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 VAV2P52735 878 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 AKNAD1Q5T1N1 836 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 NANOGNBQ7Z5D8 188 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC125Q86Z20 511 aa8.04□□□□□ -1.12
SYNE1-228ENST00000490135 TSR2Q969E8 191 aaKnown RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 THUMPD2Q9BTF0 503 aaKnown RBP8.04□□□□□ -1.12
SYNE1-228ENST00000490135 NPC1L1Q9UHC9 1359 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 IPO5O00410 1097 aaKnown RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 KRT83P78385 493 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 FAM69CQ0P6D2 419 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 MFSD6Q6ZSS7 791 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 GET4Q7L5D6 327 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 LCA5Q86VQ0 697 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 FAM81BQ96LP2 452 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CRNKL1Q9BZJ0 848 aaKnown RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 SPC25Q9HBM1 224 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 METAP2P50579 478 aaKnown RBP eCLIP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 GSCP56915 257 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CCT2P78371 535 aaKnown RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 PPP2R5CQ13362 524 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 SND1Q7KZF4 910 aaKnown RBP eCLIP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CCDC26Q8TAB7 109 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 ZNF653Q96CK0 615 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CDC5LQ99459 802 aaKnown RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 MYD88Q99836 296 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 PAPOLBQ9NRJ5 636 aaKnown RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 ZNF446Q9NWS9 450 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 TROVE2P10155 538 aaKnown RBP eCLIP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 CTCFP49711 727 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-228ENST00000490135 DEUP1Q05D60 604 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 MTA1Q13330 715 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 PHLDB2Q86SQ0 1253 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 IFT81Q8WYA0 676 aa8.03□□□□□ -1.12
SYNE1-228ENST00000490135 STX10O60499 249 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms