RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	TDRD3	Q9H7E2	651 aa	Known RBP	10.91	□□□□□ -0.66
USP4-213	ENST00000488520	FOXO4	P98177	505 aa		10.9	□□□□□ -0.66
USP4-213	ENST00000488520	IFIT5	Q13325	482 aa	Known RBP	10.9	□□□□□ -0.66
USP4-213	ENST00000488520	FTSJ3	Q8IY81	847 aa	Known RBP	10.9	□□□□□ -0.66
USP4-213	ENST00000488520	LINS1	Q8NG48	757 aa		10.9	□□□□□ -0.66
USP4-213	ENST00000488520	ARHGAP45	Q92619	1136 aa		10.9	□□□□□ -0.66
USP4-213	ENST00000488520	ARMC5	Q96C12	935 aa		10.9	□□□□□ -0.66
USP4-213	ENST00000488520	ZNF70	Q9UC06	446 aa	Predicted RBP	10.9	□□□□□ -0.66
USP4-213	ENST00000488520	MYH2	Q9UKX2	1941 aa		10.9	□□□□□ -0.67
USP4-213	ENST00000488520	TCP10L2	B9ZVM9	353 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520		F6X3S4	739 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	TAF1C	Q15572	869 aa	Predicted RBP	10.89	□□□□□ -0.67
USP4-213	ENST00000488520	SLC4A8	Q2Y0W8	1093 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	SLC9C1	Q4G0N8	1177 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	TAF7L	Q5H9L4	462 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	LMBR1L	Q6UX01	489 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	C15orf52	Q6ZUT6	534 aa	Known RBP	10.89	□□□□□ -0.67
USP4-213	ENST00000488520	CNNM1	Q9NRU3	951 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	TTF2	Q9UNY4	1162 aa	Known RBP	10.89	□□□□□ -0.67
USP4-213	ENST00000488520	PTCH2	Q9Y6C5	1203 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	PTPRF	P10586	1907 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	SZT2	Q5T011	3432 aa		10.89	□□□□□ -0.67
USP4-213	ENST00000488520	CCL15-CCL14	A0A0B4J2E2	113 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	UNCX	A6NJT0	531 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	GYG1	P46976	350 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	FXR1	P51114	621 aa	Known RBP eCLIP	10.88	□□□□□ -0.67
USP4-213	ENST00000488520	FKBP1A	P62942	108 aa	Known RBP	10.88	□□□□□ -0.67
USP4-213	ENST00000488520	CCL15	Q16663	113 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	EPHA10	Q5JZY3	1008 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	MFSD14B	Q5SR56	506 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	LDHAL6A	Q6ZMR3	332 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.88	□□□□□ -0.67
USP4-213	ENST00000488520	BRI3BP	Q8WY22	251 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	SRCIN1	Q9C0H9	1055 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	TMEM39B	Q9GZU3	492 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	ZFYVE28	Q9HCC9	887 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	HDAC5	Q9UQL6	1122 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	ALPK3	Q96L96	1907 aa		10.88	□□□□□ -0.67
USP4-213	ENST00000488520	DOCK2	Q92608	1830 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	CLCN1	P35523	988 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	GCGR	P47871	477 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	TNFAIP1	Q13829	316 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	VGLL4	Q14135	290 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	CCDC57	Q2TAC2	916 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	ATF7IP	Q6VMQ6	1270 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	NBPF11	Q86T75	865 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	DZIP1L	Q8IYY4	767 aa	Known RBP	10.87	□□□□□ -0.67
USP4-213	ENST00000488520	FAM43A	Q8N2R8	423 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	SH3TC2	Q8TF17	1288 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	ZNF333	Q96JL9	665 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	TEPSIN	Q96N21	525 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	ARHGAP39	Q9C0H5	1083 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	CHMP4B	Q9H444	224 aa	Known RBP	10.87	□□□□□ -0.67
USP4-213	ENST00000488520	GPCPD1	Q9NPB8	672 aa		10.87	□□□□□ -0.67
USP4-213	ENST00000488520	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.87	□□□□□ -0.67
USP4-213	ENST00000488520	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	10.87	□□□□□ -0.67
USP4-213	ENST00000488520	NR1I2	O75469	434 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	CD46	P15529	392 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	CRK	P46108	304 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	GTF2A2	P52657	109 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	CACNB3	P54284	484 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	TDRD7	Q8NHU6	1098 aa	Known RBP	10.86	□□□□□ -0.67
USP4-213	ENST00000488520	NKX2-3	Q8TAU0	364 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	CLUAP1	Q96AJ1	413 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	CSAD	Q9Y600	493 aa		10.86	□□□□□ -0.67
USP4-213	ENST00000488520	FAM205A	Q6ZU69	1335 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	ALDH1L1	O75891	902 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	HIBADH	P31937	336 aa	Known RBP	10.85	□□□□□ -0.67
USP4-213	ENST00000488520	TNNI2	P48788	182 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	CHAF1A	Q13111	956 aa	Predicted RBP	10.85	□□□□□ -0.67
USP4-213	ENST00000488520	ARHGEF6	Q15052	776 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	GRIK5	Q16478	980 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	BEND3	Q5T5X7	828 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
USP4-213	ENST00000488520	FAM84B	Q96KN1	310 aa	Predicted RBP	10.85	□□□□□ -0.67
USP4-213	ENST00000488520	PUS3	Q9BZE2	481 aa	Known RBP	10.85	□□□□□ -0.67
USP4-213	ENST00000488520	SERPINA10	Q9UK55	444 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	ATAD5	Q96QE3	1844 aa		10.85	□□□□□ -0.67
USP4-213	ENST00000488520	PHIP	Q8WWQ0	1821 aa		10.84	□□□□□ -0.67
USP4-213	ENST00000488520	FUT2	Q10981	343 aa		10.84	□□□□□ -0.67
USP4-213	ENST00000488520	UBE4A	Q14139	1066 aa		10.84	□□□□□ -0.67
USP4-213	ENST00000488520	KIF22	Q14807	665 aa		10.84	□□□□□ -0.67
USP4-213	ENST00000488520	PUS10	Q3MIT2	529 aa	Known RBP	10.84	□□□□□ -0.67
USP4-213	ENST00000488520	ZKSCAN4	Q969J2	545 aa	Predicted RBP	10.84	□□□□□ -0.67
USP4-213	ENST00000488520	SUPT16H	Q9Y5B9	1047 aa	Known RBP	10.84	□□□□□ -0.67
USP4-213	ENST00000488520	BTBD19	C9JJ37	291 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520		H0YGN5	161 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	GRM8	O00222	908 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	TLL1	O43897	1013 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	FRAT2	O75474	233 aa	Predicted RBP	10.83	□□□□□ -0.68
USP4-213	ENST00000488520	PPP1R18	Q6NYC8	613 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	VPS37D	Q86XT2	251 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	WRNIP1	Q96S55	665 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	TMUB1	Q9BVT8	246 aa		10.83	□□□□□ -0.68
USP4-213	ENST00000488520	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.83	□□□□□ -0.68
USP4-213	ENST00000488520	SPDYE5	A6NIY4	337 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	TLR2	O60603	784 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	WDHD1	O75717	1129 aa	Predicted RBP	10.82	□□□□□ -0.68
USP4-213	ENST00000488520	TRIM27	P14373	513 aa		10.82	□□□□□ -0.68
USP4-213	ENST00000488520	GGCX	P38435	758 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 11 ms