RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 CDC27P30260 824 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 CABP4P57796 275 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 CLCQ05315 142 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 SETDB1Q15047 1291 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 NLGN1Q8N2Q7 840 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 DDX54Q8TDD1 881 aaKnown RBP5.86□□□□□ -1.47
PTCD3-216ENST00000487043 MKL1Q969V6 931 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 RAXQ9Y2V3 346 aa5.86□□□□□ -1.47
PTCD3-216ENST00000487043 MRPL42Q9Y6G3 142 aaKnown RBP5.86□□□□□ -1.47
PTCD3-216ENST00000487043 SOX1O00570 391 aaPredicted RBP5.85□□□□□ -1.47
PTCD3-216ENST00000487043 GSC2O15499 205 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 IRAK1P51617 712 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 PTPN11Q06124 597 aaPredicted RBP5.85□□□□□ -1.47
PTCD3-216ENST00000487043 TNNI3KQ59H18 835 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 MAP1SQ66K74 1059 aaPredicted RBP5.85□□□□□ -1.47
PTCD3-216ENST00000487043 MPRIPQ6WCQ1 1025 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 REC114Q7Z4M0 266 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 FAM169BQ8N8A8 192 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 SLC7A3Q8WY07 619 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 GAL3ST3Q96A11 431 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 ZC3H12CQ9C0D7 883 aaKnown RBP5.85□□□□□ -1.47
PTCD3-216ENST00000487043 STOML1Q9UBI4 398 aa5.85□□□□□ -1.47
PTCD3-216ENST00000487043 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.85□□□□□ -1.47
PTCD3-216ENST00000487043 SBNO2Q9Y2G9 1366 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 GRIN3BO60391 1043 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 CDK11BP21127 795 aaKnown RBP5.84□□□□□ -1.47
PTCD3-216ENST00000487043 GIPRP48546 466 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 GSTM4Q03013 218 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 HGSNATQ68CP4 663 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 TXNDC11Q6PKC3 985 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 PDZD3Q86UT5 571 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 CACTIN-AS1Q8N1I8 211 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 KCNB2Q92953 911 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 DEPDC7Q96QD5 511 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 ST7Q9NRC1 585 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 SNTG2Q9NY99 539 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 PPME1Q9Y570 386 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 PCDHB14Q9Y5E9 798 aa5.84□□□□□ -1.47
PTCD3-216ENST00000487043 COL17A1Q9UMD9 1497 aaPredicted RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 FAM221BA6H8Z2 402 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 H3BRJ5 948 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 LINC01387J3KSC0 135 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 TM4SF5O14894 197 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 DHX15O43143 795 aaKnown RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 COBLO75128 1261 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 IGLV1-40P01703 118 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 GSTP1P09211 210 aaKnown RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 CD97P48960 835 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 RPL6Q02878 288 aaKnown RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 ZNF252P-AS1Q0IIN9 211 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 AP3B2Q13367 1082 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 TCEAL1Q15170 157 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 EGFLAMQ63HQ2 1017 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 REXO1Q8N1G1 1221 aaKnown RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 CELF2-AS1Q8N7Q2 184 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 ACSBG1Q96GR2 724 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 ACTR10Q9NZ32 417 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 ZNRF3Q9ULT6 936 aa5.83□□□□□ -1.48
PTCD3-216ENST00000487043 EIF4G1Q04637 1599 aaKnown RBP5.83□□□□□ -1.48
PTCD3-216ENST00000487043 TRIM37O94972 964 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 TGFB1P01137 390 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 TXKP42681 527 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 CDK8P49336 464 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 ARL4DP49703 201 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 RASA3Q14644 834 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 PPP2R5EQ16537 467 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 LARP1BQ659C4 914 aaKnown RBP5.82□□□□□ -1.48
PTCD3-216ENST00000487043 Q6ZS46 218 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 ACAD11Q709F0 780 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.82□□□□□ -1.48
PTCD3-216ENST00000487043 KRTAP19-1Q8IUB9 90 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 OR6P1Q8NGX9 317 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 UBL7Q96S82 380 aaPredicted RBP5.82□□□□□ -1.48
PTCD3-216ENST00000487043 CEP41Q9BYV8 373 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 POLR3KQ9Y2Y1 108 aaPredicted RBP5.82□□□□□ -1.48
PTCD3-216ENST00000487043 WIZO95785 1651 aa5.82□□□□□ -1.48
PTCD3-216ENST00000487043 PEG3Q9GZU2 1588 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 CLSTN1O94985 981 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 ECEL1O95672 775 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 IMPDH2P12268 514 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 CD68P34810 354 aaPredicted RBP5.81□□□□□ -1.48
PTCD3-216ENST00000487043 C19orf57Q0VDD7 668 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 FAM117BQ6P1L5 589 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 LSRQ86X29 649 aaPredicted RBP5.81□□□□□ -1.48
PTCD3-216ENST00000487043 GALNT11Q8NCW6 608 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 GPBAR1Q8TDU6 330 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 CORO1BQ9BR76 489 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 TNKS2Q9H2K2 1166 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 EHMT1Q9H9B1 1298 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 PCDHA4Q9UN74 947 aa5.81□□□□□ -1.48
PTCD3-216ENST00000487043 ATAD2BQ9ULI0 1458 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 MED26O95402 600 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 HSD3B2P26439 372 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 GRIK1P39086 918 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 GP2P55259 537 aaKnown RBP5.8□□□□□ -1.48
PTCD3-216ENST00000487043 POU4F3Q15319 338 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 DDR2Q16832 855 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 SCARA3Q6AZY7 606 aa5.8□□□□□ -1.48
PTCD3-216ENST00000487043 RUFY4Q6ZNE9 571 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms