RNA–Protein interactions for RNA: ENST00000486711.1

SMC4-218, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 621 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-218ENST00000486711 SETDB2Q96T68 719 aa7.84□□□□□ -1.15
SMC4-218ENST00000486711 C12orf49Q9H741 205 aa7.84□□□□□ -1.15
SMC4-218ENST00000486711 RC3H2Q9HBD1 1191 aaKnown RBP7.84□□□□□ -1.15
SMC4-218ENST00000486711 PRDM10Q9NQV6 1147 aa7.84□□□□□ -1.15
SMC4-218ENST00000486711 PCDHA4Q9UN74 947 aa7.84□□□□□ -1.15
SMC4-218ENST00000486711 PLAGL2Q9UPG8 496 aa7.84□□□□□ -1.15
SMC4-218ENST00000486711 SNX11Q9Y5W9 270 aa7.84□□□□□ -1.15
SMC4-218ENST00000486711 IGF2BP3O00425 579 aaKnown RBP eCLIP7.83□□□□□ -1.16
SMC4-218ENST00000486711 NTF4P34130 210 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 RING1Q06587 406 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 ZBTB37Q5TC79 503 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 ANGEL2Q5VTE6 544 aaKnown RBP7.83□□□□□ -1.16
SMC4-218ENST00000486711 CDC37L1Q7L3B6 337 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 ATG4DQ86TL0 474 aaPredicted RBP7.83□□□□□ -1.16
SMC4-218ENST00000486711 PI4K2BQ8TCG2 481 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 ELMO3Q96BJ8 720 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 TNKS2Q9H2K2 1166 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 FAM8A1Q9UBU6 413 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 WWC3Q9ULE0 1092 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 CYP8B1Q9UNU6 501 aa7.83□□□□□ -1.16
SMC4-218ENST00000486711 RNASE1P07998 156 aaKnown RBP7.82□□□□□ -1.16
SMC4-218ENST00000486711 CD96P40200 585 aa7.82□□□□□ -1.16
SMC4-218ENST00000486711 C12orf40Q86WS4 652 aa7.82□□□□□ -1.16
SMC4-218ENST00000486711 HEXIM2Q96MH2 286 aaKnown RBP7.82□□□□□ -1.16
SMC4-218ENST00000486711 MBNL3Q9NUK0 354 aaKnown RBP7.82□□□□□ -1.16
SMC4-218ENST00000486711 CELA3AP09093 270 aa7.81□□□□□ -1.16
SMC4-218ENST00000486711 USP17L7P0C7H9 530 aa7.81□□□□□ -1.16
SMC4-218ENST00000486711 PCNX4Q63HM2 1172 aa7.81□□□□□ -1.16
SMC4-218ENST00000486711 FAM214BQ7L5A3 538 aa7.81□□□□□ -1.16
SMC4-218ENST00000486711 ADAMTS6Q9UKP5 1117 aa7.81□□□□□ -1.16
SMC4-218ENST00000486711 RASIP1Q5U651 963 aa7.8□□□□□ -1.16
SMC4-218ENST00000486711 UBE3DQ7Z6J8 389 aa7.8□□□□□ -1.16
SMC4-218ENST00000486711 NPM2Q86SE8 214 aaKnown RBP7.8□□□□□ -1.16
SMC4-218ENST00000486711 ASB11Q8WXH4 323 aa7.8□□□□□ -1.16
SMC4-218ENST00000486711 FRMD6Q96NE9 622 aa7.8□□□□□ -1.16
SMC4-218ENST00000486711 GNAT3A8MTJ3 354 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 C8AP07357 584 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 RANGAP1P46060 587 aaPredicted RBP7.79□□□□□ -1.16
SMC4-218ENST00000486711 SLC23A3Q6PIS1 610 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 SV2BQ7L1I2 683 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 ARMCX6Q7L4S7 300 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 LRRN4CLQ8ND94 238 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 RGS22Q8NE09 1264 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 ZNF507Q8TCN5 953 aa7.79□□□□□ -1.16
SMC4-218ENST00000486711 TTF2Q9UNY4 1162 aaKnown RBP7.79□□□□□ -1.16
SMC4-218ENST00000486711 ARID1BQ8NFD5 2236 aaPredicted RBP7.79□□□□□ -1.16
SMC4-218ENST00000486711 LRIG2O94898 1065 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 LDHBP07195 334 aaKnown RBP7.78□□□□□ -1.16
SMC4-218ENST00000486711 P4HBP07237 508 aaKnown RBP7.78□□□□□ -1.16
SMC4-218ENST00000486711 CLCN7P51798 805 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 FZD5Q13467 585 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 SPACA3Q8IXA5 215 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 FAM168AQ92567 244 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 PRDM5Q9NQX1 630 aaPredicted RBP7.78□□□□□ -1.16
SMC4-218ENST00000486711 MAPK8IP1Q9UQF2 711 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.78□□□□□ -1.16
SMC4-218ENST00000486711 CARMIL2Q6F5E8 1435 aa7.78□□□□□ -1.16
SMC4-218ENST00000486711 PRAMEF27A3QJZ7 478 aa7.77□□□□□ -1.17
SMC4-218ENST00000486711 EOMESO95936 686 aa7.77□□□□□ -1.17
SMC4-218ENST00000486711 IKZF1Q13422 519 aa7.77□□□□□ -1.17
SMC4-218ENST00000486711 LRFN4Q6PJG9 635 aa7.77□□□□□ -1.17
SMC4-218ENST00000486711 HDXQ7Z353 690 aa7.77□□□□□ -1.17
SMC4-218ENST00000486711 FOXQ1Q9C009 403 aa7.77□□□□□ -1.17
SMC4-218ENST00000486711 INPP5AQ14642 412 aa7.76□□□□□ -1.17
SMC4-218ENST00000486711 NKPD1Q17RQ9 610 aa7.76□□□□□ -1.17
SMC4-218ENST00000486711 CYFIP1Q7L576 1253 aa7.76□□□□□ -1.17
SMC4-218ENST00000486711 EIF4BP23588 611 aaKnown RBP7.75□□□□□ -1.17
SMC4-218ENST00000486711 GNA15P30679 374 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 TTBK2Q6IQ55 1244 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 FLAD1Q8NFF5 587 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 TMEM40Q8WWA1 233 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 GAL3ST3Q96A11 431 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 PLPPR2Q96GM1 343 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 WNT10AQ9GZT5 417 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 SNCAIPQ9Y6H5 919 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 PITPNM2Q9BZ72 1349 aa7.75□□□□□ -1.17
SMC4-218ENST00000486711 ERCC3P19447 782 aa7.74□□□□□ -1.17
SMC4-218ENST00000486711 CAP2P40123 477 aa7.74□□□□□ -1.17
SMC4-218ENST00000486711 JAG1P78504 1218 aa7.74□□□□□ -1.17
SMC4-218ENST00000486711 FGD1P98174 961 aa7.74□□□□□ -1.17
SMC4-218ENST00000486711 ZP2Q05996 745 aa7.74□□□□□ -1.17
SMC4-218ENST00000486711 PTPN11Q06124 597 aaPredicted RBP7.74□□□□□ -1.17
SMC4-218ENST00000486711 KRTAP4-8A0A0G2JLE6 195 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 PRPF40AO75400 957 aaKnown RBP7.73□□□□□ -1.17
SMC4-218ENST00000486711 SLITRK5O94991 958 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 LMNB1P20700 586 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 ETF1P62495 437 aaKnown RBP7.73□□□□□ -1.17
SMC4-218ENST00000486711 RPS26P62854 115 aaKnown RBP7.73□□□□□ -1.17
SMC4-218ENST00000486711 WIPI1Q5MNZ9 446 aaPredicted RBP7.73□□□□□ -1.17
SMC4-218ENST00000486711 C22orf34Q6ZV56 151 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 MFSD2AQ8NA29 543 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 MIPEPQ99797 713 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 FBRSQ9HAH7 460 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 PRDM7Q9NQW5 492 aa7.73□□□□□ -1.17
SMC4-218ENST00000486711 TPX2Q9ULW0 747 aaKnown RBP7.73□□□□□ -1.17
SMC4-218ENST00000486711 FARP2O94887 1054 aaPredicted RBP7.72□□□□□ -1.17
SMC4-218ENST00000486711 SLBPQ14493 270 aaKnown RBP eCLIP7.72□□□□□ -1.17
SMC4-218ENST00000486711 SFRP5Q5T4F7 317 aa7.72□□□□□ -1.17
SMC4-218ENST00000486711 ZNF648Q5T619 568 aaPredicted RBP7.72□□□□□ -1.17
SMC4-218ENST00000486711 HID1Q8IV36 788 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms