RNA–Protein interactions for RNA: ENST00000482558.5

SNX13-208, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 1,139 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-208ENST00000482558 SYT9Q86SS6 491 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 CHD1LQ86WJ1 897 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 C8orf58Q8NAV2 365 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 IP6K1Q92551 441 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 PRIMPOLQ96LW4 560 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 PRDM16Q9HAZ2 1276 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 STRN4Q9NRL3 753 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 CXXC1Q9P0U4 656 aaPredicted RBP9.49□□□□□ -0.89
SNX13-208ENST00000482558 TNNQ9UQP3 1299 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 PLEKHG2Q9H7P9 1386 aa9.49□□□□□ -0.89
SNX13-208ENST00000482558 PHRF1Q9P1Y6 1649 aaKnown RBP9.49□□□□□ -0.89
SNX13-208ENST00000482558 RGPD8O14715 1765 aaPredicted RBP9.48□□□□□ -0.89
SNX13-208ENST00000482558 CCT4P50991 539 aaKnown RBP9.48□□□□□ -0.89
SNX13-208ENST00000482558 HDLBPQ00341 1268 aaKnown RBP9.48□□□□□ -0.89
SNX13-208ENST00000482558 TAGLNQ01995 201 aaKnown RBP9.48□□□□□ -0.89
SNX13-208ENST00000482558 BMP2KLQ5H9B9 411 aa9.48□□□□□ -0.89
SNX13-208ENST00000482558 GORABQ5T7V8 394 aa9.48□□□□□ -0.89
SNX13-208ENST00000482558 TSPYL6Q8N831 410 aa9.48□□□□□ -0.89
SNX13-208ENST00000482558 THUMPD2Q9BTF0 503 aaKnown RBP9.48□□□□□ -0.89
SNX13-208ENST00000482558 STK31Q9BXU1 1019 aa9.48□□□□□ -0.89
SNX13-208ENST00000482558 SUGT1Q9Y2Z0 365 aa9.48□□□□□ -0.89
SNX13-208ENST00000482558 NWD1Q149M9 1564 aa9.48□□□□□ -0.89
SNX13-208ENST00000482558 CACNA1FO60840 1977 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 TPD52L2O43399 206 aaKnown RBP9.47□□□□□ -0.89
SNX13-208ENST00000482558 HMMRO75330 724 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 HOXB7P09629 217 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 COL9A3Q14050 684 aaPredicted RBP9.47□□□□□ -0.89
SNX13-208ENST00000482558 COL19A1Q14993 1142 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 MTHFSDQ2M296 383 aaKnown RBP9.47□□□□□ -0.89
SNX13-208ENST00000482558 LCE3BQ5TA77 95 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 CCDC30Q5VVM6 783 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 TBC1D32Q96NH3 1257 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 TSPYL4Q9UJ04 414 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 MAP3K5Q99683 1374 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 MST1RQ04912 1400 aa9.47□□□□□ -0.89
SNX13-208ENST00000482558 KIF1AQ12756 1690 aa9.46□□□□□ -0.89
SNX13-208ENST00000482558 FAM83GA6ND36 823 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 WEE1P30291 646 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 IGBP1P78318 339 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 TRIM28Q13263 835 aaKnown RBP9.46□□□□□ -0.9
SNX13-208ENST00000482558 TAF7Q15545 349 aaPredicted RBP9.46□□□□□ -0.9
SNX13-208ENST00000482558 AMOTQ4VCS5 1084 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 PRSS36Q5K4E3 855 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 SDE2Q6IQ49 451 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 BICDL1Q6ZP65 573 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 SKAP1Q86WV1 359 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 TNS4Q8IZW8 715 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 TNFRSF25Q93038 417 aa9.46□□□□□ -0.9
SNX13-208ENST00000482558 LRRC37A3O60309 1634 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 hCG_2014768A0A024R1R8 64 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 M0R082 166 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 ELL2O00472 640 aaPredicted RBP9.45□□□□□ -0.9
SNX13-208ENST00000482558 H2AFB1P0C5Y9 115 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 H2AFB2P0C5Z0 115 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 EPHA4P54764 986 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 MCM10Q7L590 875 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 NBPF11Q86T75 865 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 EXOC8Q8IYI6 725 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 ANKRD44Q8N8A2 993 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 ZNF417Q8TAU3 575 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 ARMC5Q96C12 935 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 ASB16Q96NS5 453 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 ZNF587Q96SQ5 575 aaPredicted RBP9.45□□□□□ -0.9
SNX13-208ENST00000482558 TSPAN10Q9H1Z9 355 aaPredicted RBP9.45□□□□□ -0.9
SNX13-208ENST00000482558 DCTPP1Q9H773 170 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 EGFL7Q9UHF1 273 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 GPC6Q9Y625 555 aaPredicted RBP9.45□□□□□ -0.9
SNX13-208ENST00000482558 OVOS2A0A0G2JMS6 1433 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 DCCP43146 1447 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 LMTK3Q96Q04 1460 aa9.45□□□□□ -0.9
SNX13-208ENST00000482558 GNAI3P08754 354 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 ATP2B1P20020 1258 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 IGFBP4P22692 258 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 MAPK1P28482 360 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 DCTN1Q14203 1278 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 EGFLAMQ63HQ2 1017 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 ZSCAN29Q8IWY8 852 aaPredicted RBP9.44□□□□□ -0.9
SNX13-208ENST00000482558 SCG3Q8WXD2 468 aaKnown RBP9.44□□□□□ -0.9
SNX13-208ENST00000482558 MKNK1Q9BUB5 465 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 C19orf44Q9H6X5 657 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 PRKAG2Q9UGJ0 569 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 HDAC5Q9UQL6 1122 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 USP19O94966 1318 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 NCAPD2Q15021 1401 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 NFAT5O94916 1531 aa9.44□□□□□ -0.9
SNX13-208ENST00000482558 MARF1Q9Y4F3 1742 aaKnown RBP9.44□□□□□ -0.9
SNX13-208ENST00000482558 SLIT3O75094 1523 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 PXDNLA1KZ92 1463 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 MSH6P52701 1360 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 FOXO3O43524 673 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 IBSPP21815 317 aaPredicted RBP9.43□□□□□ -0.9
SNX13-208ENST00000482558 FKBP5Q13451 457 aaPredicted RBP9.43□□□□□ -0.9
SNX13-208ENST00000482558 PTPROQ16827 1216 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 CCDC144BQ3MJ40 725 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 PLEKHO1Q53GL0 409 aaPredicted RBP9.43□□□□□ -0.9
SNX13-208ENST00000482558 EAPPQ56P03 285 aaPredicted RBP9.43□□□□□ -0.9
SNX13-208ENST00000482558 ANKRD45Q5TZF3 282 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 SLC43A3Q8NBI5 491 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 C22orf23Q9BZE7 217 aa9.43□□□□□ -0.9
SNX13-208ENST00000482558 NLRP2Q9NX02 1062 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms