RNA–Protein interactions for RNA: ENST00000482519.1

VAMP4-204, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 3

Gene VAMP4, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-204ENST00000482519 PTPRAP18433 802 aa20.07■□□□□ 0.8
VAMP4-204ENST00000482519 TMED8Q6PL24 325 aaPredicted RBP20.07■□□□□ 0.8
VAMP4-204ENST00000482519 CERS3Q8IU89 383 aa20.07■□□□□ 0.8
VAMP4-204ENST00000482519 CRACR2BQ8N4Y2 399 aaPredicted RBP20.07■□□□□ 0.8
VAMP4-204ENST00000482519 GPATCH3Q96I76 525 aa20.07■□□□□ 0.8
VAMP4-204ENST00000482519 ECHDC1Q9NTX5 307 aa20.07■□□□□ 0.8
VAMP4-204ENST00000482519 FOCADQ5VW36 1801 aa20.06■□□□□ 0.8
VAMP4-204ENST00000482519 CCDC85CA6NKD9 419 aa20.06■□□□□ 0.8
VAMP4-204ENST00000482519 BTBD19C9JJ37 291 aa20.06■□□□□ 0.8
VAMP4-204ENST00000482519 NOM1Q5C9Z4 860 aaKnown RBP20.06■□□□□ 0.8
VAMP4-204ENST00000482519 TSHZ3Q63HK5 1081 aa20.06■□□□□ 0.8
VAMP4-204ENST00000482519 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.06■□□□□ 0.8
VAMP4-204ENST00000482519 ZFYVE28Q9HCC9 887 aa20.06■□□□□ 0.8
VAMP4-204ENST00000482519 HLA-DOAP06340 250 aa20.05■□□□□ 0.8
VAMP4-204ENST00000482519 SLFNL1Q499Z3 407 aa20.05■□□□□ 0.8
VAMP4-204ENST00000482519 CCDC84Q86UT8 332 aaPredicted RBP20.05■□□□□ 0.8
VAMP4-204ENST00000482519 ZBTB47Q9UFB7 747 aaPredicted RBP20.05■□□□□ 0.8
VAMP4-204ENST00000482519 HERC5Q9UII4 1024 aaKnown RBP20.05■□□□□ 0.8
VAMP4-204ENST00000482519 KCNH4Q9UQ05 1017 aa20.05■□□□□ 0.8
VAMP4-204ENST00000482519 DOCK1Q14185 1865 aa20.05■□□□□ 0.8
VAMP4-204ENST00000482519 TRIM75PA6NK02 468 aa20.04■□□□□ 0.8
VAMP4-204ENST00000482519 CXCL11O14625 94 aa20.04■□□□□ 0.8
VAMP4-204ENST00000482519 RIOK1Q9BRS2 568 aaKnown RBP20.04■□□□□ 0.8
VAMP4-204ENST00000482519 MYH1P12882 1939 aa20.04■□□□□ 0.8
VAMP4-204ENST00000482519 TCRBV5S4A2TA0A5A2 114 aa20.03■□□□□ 0.8
VAMP4-204ENST00000482519 RRP1BQ14684 758 aaKnown RBP20.03■□□□□ 0.8
VAMP4-204ENST00000482519 FOXP4Q8IVH2 680 aaPredicted RBP20.03■□□□□ 0.8
VAMP4-204ENST00000482519 CRNKL1Q9BZJ0 848 aaKnown RBP20.03■□□□□ 0.8
VAMP4-204ENST00000482519 AFG3L2Q9Y4W6 797 aa20.03■□□□□ 0.8
VAMP4-204ENST00000482519 SUPT16HQ9Y5B9 1047 aaKnown RBP20.03■□□□□ 0.8
VAMP4-204ENST00000482519 PDHXO00330 501 aa20.02■□□□□ 0.8
VAMP4-204ENST00000482519 ADD2P35612 726 aa20.02■□□□□ 0.8
VAMP4-204ENST00000482519 CAP2P40123 477 aa20.02■□□□□ 0.8
VAMP4-204ENST00000482519 SP3Q02447 781 aa20.02■□□□□ 0.8
VAMP4-204ENST00000482519 GADL1Q6ZQY3 521 aa20.02■□□□□ 0.8
VAMP4-204ENST00000482519 ARMT1Q9H993 441 aa20.02■□□□□ 0.8
VAMP4-204ENST00000482519 CHGBP05060 677 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 ANKRD45Q5TZF3 282 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 ANKRD23Q86SG2 305 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 LCORLQ8N3X6 602 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 CD99L2Q8TCZ2 262 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 SIPA1L1O43166 1804 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 ATAD5Q96QE3 1844 aa20.01■□□□□ 0.79
VAMP4-204ENST00000482519 MBD4O95243 580 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 GDF11O95390 407 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 POLR3DP05423 398 aaPredicted RBP20■□□□□ 0.79
VAMP4-204ENST00000482519 MOGSQ13724 837 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 ZSCAN25Q6NSZ9 544 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 FASTKD5Q7L8L6 764 aaKnown RBP20■□□□□ 0.79
VAMP4-204ENST00000482519 EXOC6Q8TAG9 804 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 OTUD7AQ8TE49 926 aaPredicted RBP20■□□□□ 0.79
VAMP4-204ENST00000482519 SDR42E1Q8WUS8 393 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 ERO1AQ96HE7 468 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 DNAJC18Q9H819 358 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 ZCCHC17Q9NP64 241 aaKnown RBP20■□□□□ 0.79
VAMP4-204ENST00000482519 TRIM17Q9Y577 477 aa20■□□□□ 0.79
VAMP4-204ENST00000482519 A0A0G2JLL6 359 aaPredicted RBP19.99■□□□□ 0.79
VAMP4-204ENST00000482519 ECM2O94769 699 aaPredicted RBP19.99■□□□□ 0.79
VAMP4-204ENST00000482519 SPP2Q13103 211 aa19.99■□□□□ 0.79
VAMP4-204ENST00000482519 HDAC1Q13547 482 aaPredicted RBP19.99■□□□□ 0.79
VAMP4-204ENST00000482519 PKN2Q16513 984 aaKnown RBP19.99■□□□□ 0.79
VAMP4-204ENST00000482519 PRRT2Q7Z6L0 340 aaPredicted RBP19.99■□□□□ 0.79
VAMP4-204ENST00000482519 TTC6Q86TZ1 520 aa19.99■□□□□ 0.79
VAMP4-204ENST00000482519 MCM9Q9NXL9 1143 aa19.99■□□□□ 0.79
VAMP4-204ENST00000482519 MYH7P12883 1935 aa19.99■□□□□ 0.79
VAMP4-204ENST00000482519 PHIPQ8WWQ0 1821 aa19.99■□□□□ 0.79
VAMP4-204ENST00000482519 USP17L5A8MUK1 530 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 TLR2O60603 784 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 AAMPQ13685 434 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 GPAT2Q6NUI2 795 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 METTL16Q86W50 562 aaKnown RBP19.98■□□□□ 0.79
VAMP4-204ENST00000482519 ZNF280CQ8ND82 737 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 GCC1Q96CN9 775 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 CPA4Q9UI42 421 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 SERPINB13Q9UIV8 391 aa19.98■□□□□ 0.79
VAMP4-204ENST00000482519 NAV1Q8NEY1 1877 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 ERC2O15083 957 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 PRKAB2O43741 272 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 ASNSP08243 561 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 CYP2C8P10632 490 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 PLCD1P51178 756 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 JAG1P78504 1218 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 UBE3CQ15386 1083 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 SHROOM1Q2M3G4 852 aaPredicted RBP19.97■□□□□ 0.79
VAMP4-204ENST00000482519 AS3MTQ9HBK9 375 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 TTC41PQ6P2S7 1318 aa19.97■□□□□ 0.79
VAMP4-204ENST00000482519 MX1P20591 662 aa19.96■□□□□ 0.79
VAMP4-204ENST00000482519 OTOP1Q7RTM1 612 aa19.96■□□□□ 0.79
VAMP4-204ENST00000482519 KBTBD3Q8NAB2 608 aa19.96■□□□□ 0.79
VAMP4-204ENST00000482519 PARK7Q99497 189 aaKnown RBP19.96■□□□□ 0.79
VAMP4-204ENST00000482519 RWDD1Q9H446 243 aaPredicted RBP19.96■□□□□ 0.79
VAMP4-204ENST00000482519 EFCC1Q9HA90 598 aa19.96■□□□□ 0.79
VAMP4-204ENST00000482519 DCP1AQ9NPI6 582 aaPredicted RBP19.96■□□□□ 0.79
VAMP4-204ENST00000482519 HPS5Q9UPZ3 1129 aa19.96■□□□□ 0.79
VAMP4-204ENST00000482519 HMGCS2P54868 508 aa19.95■□□□□ 0.78
VAMP4-204ENST00000482519 B4GALNT3Q6L9W6 998 aa19.95■□□□□ 0.78
VAMP4-204ENST00000482519 FBXO46Q6PJ61 603 aaPredicted RBP19.95■□□□□ 0.78
VAMP4-204ENST00000482519 TBC1D2Q9BYX2 928 aa19.95■□□□□ 0.78
VAMP4-204ENST00000482519 PUS7LQ9H0K6 701 aaKnown RBP19.95■□□□□ 0.78
VAMP4-204ENST00000482519 EHD4Q9H223 541 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms