RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 KRT25Q7Z3Z0 450 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 FBXL18Q96ME1 805 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 CARD11Q9BXL7 1154 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 C7orf69Q9H7B7 122 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 C11orf16Q9NQ32 467 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 PRDM11Q9NQV5 511 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 RTCBQ9Y3I0 505 aaKnown RBP8.65□□□□□ -1.02
VPS50-215ENST00000480943 COL18A1P39060 1754 aa8.65□□□□□ -1.02
VPS50-215ENST00000480943 TNS1Q9HBL0 1735 aaKnown RBP8.64□□□□□ -1.03
VPS50-215ENST00000480943 KRTAP9-7A8MTY7 169 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 ATP2B4P23634 1241 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 ZC3H6P61129 1189 aaKnown RBP8.64□□□□□ -1.03
VPS50-215ENST00000480943 NAA30Q147X3 362 aaPredicted RBP8.64□□□□□ -1.03
VPS50-215ENST00000480943 CHRNA2Q15822 529 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 CAPN12Q6ZSI9 719 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 RGL4Q8IZJ4 473 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 ABTB2Q8N961 1025 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 USP20Q9Y2K6 914 aa8.64□□□□□ -1.03
VPS50-215ENST00000480943 PARP4Q9UKK3 1724 aaKnown RBP8.63□□□□□ -1.03
VPS50-215ENST00000480943 SBNO2Q9Y2G9 1366 aa8.63□□□□□ -1.03
VPS50-215ENST00000480943 CAMTA1Q9Y6Y1 1673 aa8.63□□□□□ -1.03
VPS50-215ENST00000480943 USP19O94966 1318 aa8.63□□□□□ -1.03
VPS50-215ENST00000480943 OPLAHO14841 1288 aa8.63□□□□□ -1.03
VPS50-215ENST00000480943 BRD2P25440 801 aaKnown RBP8.63□□□□□ -1.03
VPS50-215ENST00000480943 PERM1Q5SV97 790 aa8.63□□□□□ -1.03
VPS50-215ENST00000480943 ETFBKMTQ8IXQ9 262 aa8.63□□□□□ -1.03
VPS50-215ENST00000480943 BRD4O60885 1362 aaPredicted RBP8.62□□□□□ -1.03
VPS50-215ENST00000480943 KIF20BQ96Q89 1820 aa8.62□□□□□ -1.03
VPS50-215ENST00000480943 MAP3K6O95382 1288 aa8.62□□□□□ -1.03
VPS50-215ENST00000480943 RARAP10276 462 aa8.62□□□□□ -1.03
VPS50-215ENST00000480943 TRIM42Q8IWZ5 723 aa8.62□□□□□ -1.03
VPS50-215ENST00000480943 UTP4Q969X6 686 aaKnown RBP8.62□□□□□ -1.03
VPS50-215ENST00000480943 ZFATQ9P243 1243 aa8.62□□□□□ -1.03
VPS50-215ENST00000480943 SSH2Q76I76 1423 aa8.62□□□□□ -1.03
VPS50-215ENST00000480943 SBF2Q86WG5 1849 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 ZBTB7CA1YPR0 619 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 TNFRSF10BO14763 440 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 XYLBO75191 536 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 SASH3O75995 380 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 TARSP26639 723 aaKnown RBP8.61□□□□□ -1.03
VPS50-215ENST00000480943 DHX32Q7L7V1 743 aaKnown RBP8.61□□□□□ -1.03
VPS50-215ENST00000480943 NLRP13Q86W25 1043 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 CMTR1Q8N1G2 835 aaKnown RBP8.61□□□□□ -1.03
VPS50-215ENST00000480943 UBL7Q96S82 380 aaPredicted RBP8.61□□□□□ -1.03
VPS50-215ENST00000480943 CD163L1Q9NR16 1453 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 MYOM1P52179 1685 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 LRRC37A3O60309 1634 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 CPDO75976 1380 aa8.61□□□□□ -1.03
VPS50-215ENST00000480943 KTN1Q86UP2 1357 aaKnown RBP8.61□□□□□ -1.03
VPS50-215ENST00000480943 NFAT5O94916 1531 aa8.6□□□□□ -1.03
VPS50-215ENST00000480943 SPATA31A5Q5VU36 1347 aa8.6□□□□□ -1.03
VPS50-215ENST00000480943 SPATA31A7Q8IWB4 1347 aa8.6□□□□□ -1.03
VPS50-215ENST00000480943 ARID4AP29374 1257 aaPredicted RBP8.6□□□□□ -1.03
VPS50-215ENST00000480943 ZNF648Q5T619 568 aaPredicted RBP8.6□□□□□ -1.03
VPS50-215ENST00000480943 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.6□□□□□ -1.03
VPS50-215ENST00000480943 ARMC10Q8N2F6 343 aa8.6□□□□□ -1.03
VPS50-215ENST00000480943 AGGF1Q8N302 714 aaeCLIP8.6□□□□□ -1.03
VPS50-215ENST00000480943 GIMAP7Q8NHV1 300 aa8.6□□□□□ -1.03
VPS50-215ENST00000480943 SHKBP1Q8TBC3 707 aa8.6□□□□□ -1.03
VPS50-215ENST00000480943 BLMP54132 1417 aaPredicted RBP8.6□□□□□ -1.03
VPS50-215ENST00000480943 CPSF1Q10570 1443 aaKnown RBP8.6□□□□□ -1.03
VPS50-215ENST00000480943 SPATA31A1Q5TZJ5 1347 aa8.59□□□□□ -1.03
VPS50-215ENST00000480943 TTC21BQ7Z4L5 1316 aa8.59□□□□□ -1.03
VPS50-215ENST00000480943 COL5A2P05997 1499 aaPredicted RBP8.59□□□□□ -1.03
VPS50-215ENST00000480943 EGFRP00533 1210 aa8.59□□□□□ -1.03
VPS50-215ENST00000480943 GCP02774 474 aa8.59□□□□□ -1.03
VPS50-215ENST00000480943 KRT27Q7Z3Y8 459 aa8.59□□□□□ -1.03
VPS50-215ENST00000480943 PCGF6Q9BYE7 350 aa8.59□□□□□ -1.03
VPS50-215ENST00000480943 RGPD2P0DJD1 1756 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 NCANO14594 1321 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 TTC21AQ8NDW8 1320 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 HMX2A2RU54 273 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 PRRG2O14669 202 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 EVA1CP58658 441 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 ZNF124Q15973 351 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 FAM26DQ5JW98 314 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 CLEC10AQ8IUN9 316 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 TP53INP2Q8IXH6 220 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 TRPM4Q8TD43 1214 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 TMC1Q8TDI8 760 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 FAM13BQ9NYF5 915 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 STIM2Q9P246 746 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 USP35Q9P2H5 1018 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 KCNMB2Q9Y691 235 aa8.58□□□□□ -1.04
VPS50-215ENST00000480943 FAM208AQ9UK61 1670 aaKnown RBP8.58□□□□□ -1.04
VPS50-215ENST00000480943 RREB1Q92766 1687 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 TMEM88BA6NKF7 163 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 GPLD1P80108 840 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 MLLT1Q03111 559 aaPredicted RBP8.57□□□□□ -1.04
VPS50-215ENST00000480943 SMG9Q9H0W8 520 aaKnown RBP8.57□□□□□ -1.04
VPS50-215ENST00000480943 PIM2Q9P1W9 311 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 SEPT3Q9UH03 358 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 ABCC6O95255 1503 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 A0A1W2PP64 1363 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 USP47Q96K76 1375 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 PEAK1Q9H792 1746 aa8.57□□□□□ -1.04
VPS50-215ENST00000480943 CRB1P82279 1406 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 EDC4Q6P2E9 1401 aaKnown RBP8.56□□□□□ -1.04
VPS50-215ENST00000480943 ST20-MTHFSA0A0A6YYL1 179 aa8.56□□□□□ -1.04
VPS50-215ENST00000480943 FARP2O94887 1054 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms