RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 CSADQ9Y600 493 aa7.79□□□□□ -1.16
VPS50-214ENST00000477935 RBM47A0AV96 593 aaKnown RBP7.78□□□□□ -1.16
VPS50-214ENST00000477935 DCDC2CA8MYV0 355 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 DYNC1LI2O43237 492 aaPredicted RBP7.78□□□□□ -1.16
VPS50-214ENST00000477935 SEPT6Q14141 434 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 PPM1JQ5JR12 505 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 SEZ6L2Q6UXD5 910 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.78□□□□□ -1.16
VPS50-214ENST00000477935 SMYD4Q8IYR2 804 aaPredicted RBP7.78□□□□□ -1.16
VPS50-214ENST00000477935 FBXL6Q8N531 539 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 RNF214Q8ND24 703 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 TBC1D32Q96NH3 1257 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 PCDHB5Q9Y5E4 795 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 SHROOM2Q13796 1616 aa7.78□□□□□ -1.16
VPS50-214ENST00000477935 LOC100996750A0A140TA64 210 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 WDR64B1ANS9 1081 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 RNGTTO60942 597 aaKnown RBP7.77□□□□□ -1.17
VPS50-214ENST00000477935 TGFB1P01137 390 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 F13BP05160 661 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 NEFMP07197 916 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 ADMP35318 185 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 RING1Q06587 406 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 INPP5AQ14642 412 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 ZAR1Q86SH2 424 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 C12orf40Q86WS4 652 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 SHISA5Q8N114 240 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 KRTAP4-6Q9BYQ5 205 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 LGR6Q9HBX8 967 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 C1GALT1Q9NS00 363 aa7.77□□□□□ -1.17
VPS50-214ENST00000477935 F6X3S4 739 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 TFE3P19532 575 aaPredicted RBP7.76□□□□□ -1.17
VPS50-214ENST00000477935 LRFN4Q6PJG9 635 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 PHC3Q8NDX5 983 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 GATA6Q92908 595 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 ISL2Q96A47 359 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 ELMO3Q96BJ8 720 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 PLPPR2Q96GM1 343 aa7.76□□□□□ -1.17
VPS50-214ENST00000477935 PRR19A6NJB7 356 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 NTF4P34130 210 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 GIMAP7Q8NHV1 300 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 MIR1-1HGQ9H1L0 117 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 PICK1Q9NRD5 415 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 PCOLCE2Q9UKZ9 415 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 FHAD1B1AJZ9 1412 aa7.75□□□□□ -1.17
VPS50-214ENST00000477935 TOP2BQ02880 1626 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 ABCA10Q8WWZ4 1543 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 CDK8P49336 464 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 WIPI1Q5MNZ9 446 aaPredicted RBP7.74□□□□□ -1.17
VPS50-214ENST00000477935 LDLRAD1Q5T700 205 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 ZBTB37Q5TC79 503 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 HDXQ7Z353 690 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 RGS22Q8NE09 1264 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 RSRP1Q9BUV0 290 aa7.74□□□□□ -1.17
VPS50-214ENST00000477935 SSU72Q9NP77 194 aaKnown RBP7.74□□□□□ -1.17
VPS50-214ENST00000477935 SCO2A0A1W2PP80 73 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 PRAMEF27A3QJZ7 478 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 FANCGO15287 622 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 GBP2P32456 591 aaPredicted RBP7.73□□□□□ -1.17
VPS50-214ENST00000477935 CDK5R2Q13319 367 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 CPSF6Q16630 551 aaKnown RBP eCLIP7.73□□□□□ -1.17
VPS50-214ENST00000477935 CYFIP1Q7L576 1253 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 RHOVQ96L33 236 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 TMEM74Q96NL1 305 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 METTL22Q9BUU2 404 aaPredicted RBP7.73□□□□□ -1.17
VPS50-214ENST00000477935 OSBPL1AQ9BXW6 950 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 ATG3Q9NT62 314 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 SNCAIPQ9Y6H5 919 aa7.73□□□□□ -1.17
VPS50-214ENST00000477935 FAM170BA6NMN3 283 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 PWP1Q13610 501 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 LRP8Q14114 963 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 TSNAXIP1Q2TAA8 658 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 ZNF765Q7L2R6 523 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 ERMP1Q7Z2K6 904 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 UBE3DQ7Z6J8 389 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 RELL1Q8IUW5 271 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.72□□□□□ -1.17
VPS50-214ENST00000477935 TMEM87AQ8NBN3 555 aa7.72□□□□□ -1.17
VPS50-214ENST00000477935 JARID2Q92833 1246 aaPredicted RBP7.72□□□□□ -1.17
VPS50-214ENST00000477935 CCDC9Q9Y3X0 531 aaKnown RBP7.72□□□□□ -1.17
VPS50-214ENST00000477935 TSPOAP1O95153 1857 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 PBRM1Q86U86 1689 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 PF4P02776 101 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 CD97P48960 835 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 LMNB2Q03252 620 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 CAMK2GQ13555 558 aaPredicted RBP7.71□□□□□ -1.18
VPS50-214ENST00000477935 OGFOD3Q6PK18 319 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 CCDC84Q86UT8 332 aaPredicted RBP7.71□□□□□ -1.18
VPS50-214ENST00000477935 BACH2Q9BYV9 841 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 KBTBD4Q9NVX7 518 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 PIM2Q9P1W9 311 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 CUX1P39880 1505 aa7.71□□□□□ -1.18
VPS50-214ENST00000477935 PLB1Q6P1J6 1458 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 COL17A1Q9UMD9 1497 aaPredicted RBP7.7□□□□□ -1.18
VPS50-214ENST00000477935 MINDY4BA8MYZ0 360 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 GFRA2O00451 464 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 COBLO75128 1261 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 SSTR4P31391 388 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 GRIK1P39086 918 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 CYP27A1Q02318 531 aa7.7□□□□□ -1.18
VPS50-214ENST00000477935 ARTNQ5T4W7 220 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms