RNA–Protein interactions for RNA: ENST00000474825.1

ATG4A-207, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-207ENST00000474825 NAPBQ9H115 298 aa7.85□□□□□ -1.15
ATG4A-207ENST00000474825 DCP1AQ9NPI6 582 aaPredicted RBP7.85□□□□□ -1.15
ATG4A-207ENST00000474825 PDRG1Q9NUG6 133 aa7.85□□□□□ -1.15
ATG4A-207ENST00000474825 LIMCH1Q9UPQ0 1083 aa7.85□□□□□ -1.15
ATG4A-207ENST00000474825 SLC4A4Q9Y6R1 1079 aa7.85□□□□□ -1.15
ATG4A-207ENST00000474825 BRCA1P38398 1863 aaKnown RBP7.85□□□□□ -1.15
ATG4A-207ENST00000474825 TIAM2Q8IVF5 1701 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 NFKBIEO00221 500 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 PPIP5K2O43314 1243 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 MMP14P50281 582 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 DIXDC1Q155Q3 683 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 AOC3Q16853 763 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 CTR9Q6PD62 1173 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 TBC1D10CQ8IV04 446 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 PTCD2Q8WV60 388 aaKnown RBP7.84□□□□□ -1.15
ATG4A-207ENST00000474825 ZDHHC15Q96MV8 337 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 DBNDD1Q9H9R9 158 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 CWC22Q9HCG8 908 aaKnown RBP7.84□□□□□ -1.15
ATG4A-207ENST00000474825 KCNQ5Q9NR82 932 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 SH2B1Q9NRF2 756 aaPredicted RBP7.84□□□□□ -1.15
ATG4A-207ENST00000474825 AATFQ9NY61 560 aaKnown RBP eCLIP7.84□□□□□ -1.15
ATG4A-207ENST00000474825 DAXXQ9UER7 740 aaPredicted RBP7.84□□□□□ -1.15
ATG4A-207ENST00000474825 JAG2Q9Y219 1238 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 DAGLAQ9Y4D2 1042 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 TACC3Q9Y6A5 838 aa7.84□□□□□ -1.15
ATG4A-207ENST00000474825 ZNF646O15015 1829 aaPredicted RBP7.84□□□□□ -1.15
ATG4A-207ENST00000474825 MYO3BQ8WXR4 1341 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 COL4A5P29400 1685 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 ORC4O43929 436 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 APPP05067 770 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 CPA1P15085 419 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 YBX3P16989 372 aaKnown RBP eCLIP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 IARSP41252 1262 aaKnown RBP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 BTDP43251 543 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 ANTXR2P58335 489 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 PPARAQ07869 468 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 PPP4R3BQ5MIZ7 849 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 AKNAD1Q5T1N1 836 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 APOBEC3HQ6NTF7 200 aaKnown RBP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 NCOA7Q8NI08 942 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 SH3RF3Q8TEJ3 882 aaPredicted RBP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 SDR42E1Q8WUS8 393 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 RNF41Q9H4P4 317 aaPredicted RBP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 CNNM2Q9H8M5 875 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 ARPP21Q9UBL0 812 aaPredicted RBP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 SERPINA10Q9UK55 444 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 ZNRF3Q9ULT6 936 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.83□□□□□ -1.16
ATG4A-207ENST00000474825 STK24Q9Y6E0 443 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 MYH13Q9UKX3 1938 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 ROBO3Q96MS0 1386 aa7.83□□□□□ -1.16
ATG4A-207ENST00000474825 USP17L12C9JPN9 530 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 USP17L21D6R901 530 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 MCM5P33992 734 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 LIFRP42702 1097 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 TDO2P48775 406 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 HAND2P61296 217 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 ST3GAL1Q11201 340 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 ME3Q16798 604 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 C12orf60Q5U649 245 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 RSBN1LQ6PCB5 846 aaPredicted RBP7.82□□□□□ -1.16
ATG4A-207ENST00000474825 SGMS1Q86VZ5 419 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 MTMR14Q8NCE2 650 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 NKX2-3Q8TAU0 364 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 IGDCC4Q8TDY8 1250 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 ZNF274Q96GC6 653 aaPredicted RBP7.82□□□□□ -1.16
ATG4A-207ENST00000474825 TMEM87BQ96K49 555 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 IDI2Q9BXS1 227 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 KRT23Q9C075 422 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 TAOK3Q9H2K8 898 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 ZNF277Q9NRM2 450 aaPredicted RBP7.82□□□□□ -1.16
ATG4A-207ENST00000474825 CHMP5Q9NZZ3 219 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 TPCN1Q9ULQ1 816 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 TTF2Q9UNY4 1162 aaKnown RBP7.82□□□□□ -1.16
ATG4A-207ENST00000474825 LAMA4Q16363 1823 aa7.82□□□□□ -1.16
ATG4A-207ENST00000474825 NEDD4P46934 1319 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 FER1L6Q2WGJ9 1857 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 CCDC88AQ3V6T2 1871 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 SCN9AQ15858 1988 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 WDHD1O75717 1129 aaPredicted RBP7.81□□□□□ -1.16
ATG4A-207ENST00000474825 LARGE1O95461 756 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 CRKP46108 304 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 PRELPP51888 382 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 TRDNQ13061 729 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 Q6ZUG5 572 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 CYB5R4Q7L1T6 521 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 LARGE2Q8N3Y3 721 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 AGBL3Q8NEM8 1001 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 TEKT1Q969V4 418 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 ZBED3Q96IU2 234 aaPredicted RBP7.81□□□□□ -1.16
ATG4A-207ENST00000474825 NOL10Q9BSC4 688 aaKnown RBP7.81□□□□□ -1.16
ATG4A-207ENST00000474825 MXD3Q9BW11 206 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 ZSWIM5Q9P217 1185 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 NID2Q14112 1375 aa7.81□□□□□ -1.16
ATG4A-207ENST00000474825 FLT1P17948 1338 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 PSME4Q14997 1843 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 FZD9O00144 591 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 PSMD14O00487 310 aa7.8□□□□□ -1.16
ATG4A-207ENST00000474825 SH2B2O14492 632 aaPredicted RBP7.8□□□□□ -1.16
ATG4A-207ENST00000474825 PRC1O43663 620 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms