RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 CCDC144CPQ8IYA2 1237 aa3.99□□□□□ -1.77
UBR3-208ENST00000474426 DZIP1LQ8IYY4 767 aaKnown RBP3.99□□□□□ -1.77
UBR3-208ENST00000474426 EPS8L3Q8TE67 593 aaKnown RBP3.99□□□□□ -1.77
UBR3-208ENST00000474426 MAML1Q92585 1016 aa3.99□□□□□ -1.77
UBR3-208ENST00000474426 NTPCRQ9BSD7 190 aaKnown RBP3.99□□□□□ -1.77
UBR3-208ENST00000474426 BRD8Q9H0E9 1235 aa3.99□□□□□ -1.77
UBR3-208ENST00000474426 KCTD10Q9H3F6 313 aa3.99□□□□□ -1.77
UBR3-208ENST00000474426 MMADHCQ9H3L0 296 aaPredicted RBP3.99□□□□□ -1.77
UBR3-208ENST00000474426 HOMER2Q9NSB8 354 aa3.99□□□□□ -1.77
UBR3-208ENST00000474426 RNF19AQ9NV58 838 aa3.99□□□□□ -1.77
UBR3-208ENST00000474426 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.99□□□□□ -1.77
UBR3-208ENST00000474426 NEBLO76041 1014 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 BAG4O95429 457 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 LMOD1P29536 600 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 HSPA4P34932 840 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 PEX5P50542 639 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 HNRNPH2P55795 449 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 LMNB2Q03252 620 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TTF1Q15361 905 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 NBPF8Q3BBV2 869 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TMEM164Q5U3C3 297 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 HIBCHQ6NVY1 386 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 ESX1Q8N693 406 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ANKRD42Q8N9B4 389 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 MGARPQ8TDB4 240 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 SPIRE2Q8WWL2 714 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ATXN2LQ8WWM7 1075 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.98□□□□□ -1.77
UBR3-208ENST00000474426 C8orf76Q96K31 380 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TSGA10Q9BZW7 698 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ZNHIT6Q9NWK9 470 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 ZNF446Q9NWS9 450 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 PARP2Q9UGN5 583 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 PEG3Q9GZU2 1588 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TRIM21P19474 475 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 PFKPQ01813 784 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 GUCY1B3Q02153 619 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 DDX10Q13206 875 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 RBBP5Q15291 538 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 GPATCH4Q5T3I0 446 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 OSTM1Q86WC4 334 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 IFNL2Q8IZJ0 200 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 USP38Q8NB14 1042 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 C3orf20Q8ND61 904 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ANKRD7Q92527 254 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 CORO1BQ9BR76 489 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TACO1Q9BSH4 297 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 TTPALQ9BTX7 342 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 UTP14AQ9BVJ6 771 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 PLVAPQ9BX97 442 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TGIF2Q9GZN2 237 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 HDAC6Q9UBN7 1215 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 LAMP5Q9UJQ1 280 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ZNF112Q9UJU3 913 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 PNMA8BQ9ULN7 279 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 TMX2Q9Y320 296 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TRIM64A6NGJ6 449 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 TRIM64BA6NI03 449 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ZNF189O75820 626 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 STAM2O75886 525 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 HCLS1P14317 486 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 RAB27AP51159 221 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 NUCB2P80303 420 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ATF7IPQ6VMQ6 1270 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 CPXCR1Q8N123 301 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 EIF2AK1Q9BQI3 630 aaKnown RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 DNAI2Q9GZS0 605 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 SLKQ9H2G2 1235 aaPredicted RBP3.98□□□□□ -1.77
UBR3-208ENST00000474426 DBNDD1Q9H9R9 158 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 ZFYVE28Q9HCC9 887 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 GTF2A1LQ9UNN4 478 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 PRELID1Q9Y255 219 aa3.98□□□□□ -1.77
UBR3-208ENST00000474426 PPP1R3GB7ZBB8 358 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 NCAM2O15394 837 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 SART1O43290 800 aaKnown RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 KCNJ13O60928 360 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 RPL13P26373 211 aaKnown RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 PRKAR2BP31323 418 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 MTHFRP42898 656 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 RXRGP48443 463 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 DMPKQ09013 629 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 SERINC3Q13530 473 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 COG2Q14746 738 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 BOLA3Q53S33 107 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 TNNI3KQ59H18 835 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 TTC39AQ5SRH9 613 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 ANO1Q5XXA6 986 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 TTLL5Q6EMB2 1281 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 SWSAP1Q6NVH7 229 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 MAATS1Q7Z4T9 603 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 GALNT5Q7Z7M9 940 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 BPHLQ86WA6 291 aaPredicted RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 TTC8Q8TAM2 541 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 NAF1Q96HR8 494 aaKnown RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 TTC12Q9H892 705 aaPredicted RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 ZCCHC17Q9NP64 241 aaKnown RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 GPR108Q9NPR9 543 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 SEPT10Q9P0V9 454 aa3.97□□□□□ -1.77
UBR3-208ENST00000474426 LUC7L2Q9Y383 392 aaKnown RBP3.97□□□□□ -1.77
UBR3-208ENST00000474426 EPN1Q9Y6I3 576 aaPredicted RBP3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms