RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 ZNF70Q9UC06 446 aaPredicted RBP12.1□□□□□ -0.47
PRPF38A-202ENST00000474048 SWAP70Q9UH65 585 aa12.1□□□□□ -0.47
PRPF38A-202ENST00000474048 WDR19Q8NEZ3 1342 aa12.1□□□□□ -0.47
PRPF38A-202ENST00000474048 DDX60LQ5H9U9 1706 aaKnown RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 ROBO3Q96MS0 1386 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 CYP2D7A0A087X1C5 515 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 CCDC69A6NI79 296 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 IFIT3O14879 490 aaKnown RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 KDM4AO75164 1064 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 WDHD1O75717 1129 aaPredicted RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 TSPY3P0CV98 308 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 TSPY8P0CW00 308 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 CPA1P15085 419 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 CACNB3P54284 484 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 AK2P54819 239 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 ZNF280AP59817 542 aaPredicted RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 SPDYE2Q495Y8 402 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 TBC1D10BQ4KMP7 808 aaPredicted RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 Q6ZUG5 572 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 STOX1Q6ZVD7 989 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 APOBEC3FQ8IUX4 373 aaKnown RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 HOOK2Q96ED9 719 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 PRMT6Q96LA8 375 aaPredicted RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 TBC1D2Q9BYX2 928 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 SH2B1Q9NRF2 756 aaPredicted RBP12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 GPRC5DQ9NZD1 345 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 SERPINB13Q9UIV8 391 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 TAOK2Q9UL54 1235 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 LIMCH1Q9UPQ0 1083 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 NEDD4P46934 1319 aa12.09□□□□□ -0.47
PRPF38A-202ENST00000474048 IQCA1LA6NCM1 817 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 ORC4O43929 436 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 CYP2D6P10635 497 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 PRELPP51888 382 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 WTAPQ15007 396 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 TMEM67Q5HYA8 995 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 PPP4R3BQ5MIZ7 849 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 FKBP1CQ5VVH2 108 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 TMTC2Q8N394 836 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 CSRNP1Q96S65 589 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 PI4KBQ9UBF8 816 aa12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 COL2A1P02458 1487 aaPredicted RBP12.08□□□□□ -0.48
PRPF38A-202ENST00000474048 WNT10BO00744 389 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 PRDM1O75626 825 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 DDNO94850 711 aaPredicted RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 HOXD11P31277 338 aaPredicted RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 NFIAQ12857 509 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 C16orf86Q6ZW13 317 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 CHST3Q7LGC8 479 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 SAMD7Q7Z3H4 446 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 MB21D2Q8IYB1 491 aaPredicted RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 FAM151AQ8WW52 585 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 BRF1Q92994 677 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 TCEANC2Q96MN5 208 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 MTA3Q9BTC8 594 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 EHD4Q9H223 541 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 DDX4Q9NQI0 724 aaKnown RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 ADARB2Q9NS39 739 aaKnown RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 HACL1Q9UJ83 578 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 ANGEL1Q9UNK9 670 aaKnown RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 PCDHAC2Q9Y5I4 1007 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 TAF6LQ9Y6J9 622 aa12.07□□□□□ -0.48
PRPF38A-202ENST00000474048 MPHOSPH10O00566 681 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 DHX16O60231 1041 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 CDK8P49336 464 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 NBPF9Q3BBW0 867 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 IFIT1BQ5T764 474 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 CPLX2Q6PUV4 134 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 FAM83AQ86UY5 434 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 DCPSQ96C86 337 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 DYNLL2Q96FJ2 89 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 TTC14Q96N46 770 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 LRRC2Q9BYS8 371 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 NBPF3Q9H094 633 aa12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 ALDH8A1Q9H2A2 487 aaPredicted RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 SLKQ9H2G2 1235 aaPredicted RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 MKRN1Q9UHC7 482 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 HERC5Q9UII4 1024 aaKnown RBP12.06□□□□□ -0.48
PRPF38A-202ENST00000474048 GOLGA8BA8MQT2 603 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 CPLX1O14810 134 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 PLCD1P51178 756 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 TFAP4Q01664 338 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 FOXP4Q8IVH2 680 aaPredicted RBP12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 SPRYD3Q8NCJ5 442 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 TMX3Q96JJ7 454 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 ZSCAN10Q96SZ4 725 aaPredicted RBP12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 CABP5Q9NP86 173 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 ZSWIM5Q9P217 1185 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 FAM198AQ9UFP1 575 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 KIF3AQ9Y496 699 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 SLC12A7Q9Y666 1083 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 TNKSO95271 1327 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 ATRNL1Q5VV63 1379 aa12.05□□□□□ -0.48
PRPF38A-202ENST00000474048 KLF18A0A0U1RQI7 1052 aa12.04□□□□□ -0.48
PRPF38A-202ENST00000474048 SHTN1A0MZ66 631 aa12.04□□□□□ -0.48
PRPF38A-202ENST00000474048 GLTPD2A6NH11 291 aa12.04□□□□□ -0.48
PRPF38A-202ENST00000474048 SLC4A3P48751 1232 aa12.04□□□□□ -0.48
PRPF38A-202ENST00000474048 EXOSC10Q01780 885 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms